Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3456

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3455: 11823 - K03424 tatD TatD DNase family protein, at 141028 to 142309 11823 mRNA_3456: 11824 - HMMPfam-Family of unknown function (DUF500)-PF04366, at 142552 to 143804 11824 mRNA_3457: 11825 - KOG1843 Uncharacterized conserved protein, at 144074 to 145634 11825

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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141,822 + 11823 mRNA_3455 0.62 -0.8
141,960 + 11823 mRNA_3455 0.73 -0.8
142,134 + 11823 mRNA_3455 0.86 -0.7
142,141 - 11823 mRNA_3455 0.87 -0.6
142,163 - 11823 mRNA_3455 0.89 0.8
142,198 + 1.4
142,396 + 2.3
142,397 - -1.4
142,399 - -0.5
142,405 - 2.0
142,409 - 2.7
142,410 - -1.0
142,414 - 1.6
142,419 + -0.4
142,435 - 0.8
142,436 + -0.1
142,560 - 1.1
142,590 - -0.0
142,593 + -0.3
142,603 + 0.2
143,014 - 11824 mRNA_3456 0.37 1.5
143,028 + 11824 mRNA_3456 0.38 1.6
143,328 - 11824 mRNA_3456 0.62 0.3
143,610 + 11824 mRNA_3456 0.84 0.9
143,734 - 0.0
143,747 - 0.3
143,758 - -0.6
143,768 + 2.2
143,807 + -0.4
143,856 - 0.8
143,891 + 0.2
143,898 + 0.3
143,900 + 0.2
143,906 - 0.8
143,909 + 1.6
143,910 - 0.3
143,917 - -0.7
143,942 + 1.4
144,202 + 0.6
144,206 - -0.6
144,327 + 11825 mRNA_3457 0.16 0.1
144,346 - 11825 mRNA_3457 0.17 0.6
144,351 + 11825 mRNA_3457 0.18 -0.9
144,504 - 11825 mRNA_3457 0.28 0.9
144,594 + 11825 mRNA_3457 0.33 0.8