Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3439

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3438: 11806 - KOG1162 Predicted small molecule transporter, at 99777 to 103344 11806 mRNA_3439: 11807 - KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins, at 104043 to 108423 11807

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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103,102 + -0.1
103,379 + -0.6
103,397 + 1.5
103,670 - 0.7
103,695 + -3.6
103,777 + 0.1
103,806 - 0.6
103,969 - 2.3
104,231 + 0.4
104,408 + -2.2
104,525 - 11807 mRNA_3439 0.11 1.4
106,338 + 11807 mRNA_3439 0.52 0.2
107,531 + 11807 mRNA_3439 0.80 -1.8
107,829 - 11807 mRNA_3439 0.86 -0.9
107,914 - 11807 mRNA_3439 0.88 -0.3
108,115 + -0.8
109,237 - -0.4
109,244 - 0.8
109,394 + 1.0