Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3418

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3417: 11785 - Hypothetical Protein, at 43744 to 46912 11785 mRNA_3418: 11786 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 47383 to 48909 11786

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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46,545 - 11785 mRNA_3417 0.88 2.0
46,554 - 11785 mRNA_3417 0.89 -0.7
46,560 + 11785 mRNA_3417 0.89 -0.2
46,679 - 0.4
46,689 - 0.0
46,695 - 1.2
46,983 - 0.4
46,989 - 0.4
46,998 + 0.0
47,100 + 1.7
47,112 + -1.8
47,138 - -0.7
47,157 - 0.3
47,157 + -1.5
47,159 + -0.6
47,161 + -0.6
47,267 - -0.1
47,270 + 1.6
47,277 + -1.1
47,299 + 0.5
47,301 + 1.8
47,308 - -0.3
47,308 - -0.6
47,312 + 1.1
47,445 + -0.8
48,325 - 11786 mRNA_3418 0.62 0.0
48,584 + 11786 mRNA_3418 0.79 0.4
48,910 + 0.2
49,097 - -0.1
49,103 + 0.1
49,180 + 0.8
49,194 - 1.8
49,195 + 1.7
49,214 + -0.1
49,325 - 0.5
49,349 - 0.1
49,371 + 1.9
49,372 + -0.4
49,376 - 0.5
49,376 - 1.9
49,378 - -0.6
49,378 - 1.0
49,379 - 0.6
49,384 + -0.6
49,387 + 0.3
49,393 - -0.1
49,396 - 0.4
49,398 + 0.1
49,400 + 0.3
49,402 + 0.3
49,406 + 0.5
49,407 + 0.2
49,409 + 1.0
49,409 + 0.6
49,420 - 0.1
49,472 - 0.0
49,496 - 0.8
49,503 - 0.0
49,505 + 1.2
49,505 + 0.8
49,508 - -0.2
49,524 + 0.3
49,527 + 0.1
49,532 - 1.4
49,534 - 1.2
49,574 + -0.2
49,582 + 1.1
49,605 + -1.9
49,610 + 0.8
49,626 - 1.2
49,626 - -0.7
49,627 - -0.6
49,627 - -0.7
49,629 + 0.6
49,638 - 0.1
49,644 + 0.5
49,663 + 0.9
49,736 - 0.2
49,754 - -0.0
49,766 - 0.4
49,776 + -0.4
49,777 - -1.3
49,784 - 0.8
49,803 - 0.2