Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3400

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3399: 11767 - KOG0733 Nuclear AAA ATPase (VCP subfamily), at 582291 to 585718 11767 mRNA_3400: 11768 - KOG3345 Uncharacterized conserved protein, at 585834 to 587522 11768

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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584,873 - 11767 mRNA_3399 0.75 0.3
584,957 - 11767 mRNA_3399 0.78 1.3
585,004 - 11767 mRNA_3399 0.79 0.5
585,100 + 11767 mRNA_3399 0.82 0.4
585,100 - 11767 mRNA_3399 0.82 0.5
585,220 + 11767 mRNA_3399 0.85 -0.0
585,303 - 11767 mRNA_3399 0.88 0.1
585,320 + 11767 mRNA_3399 0.88 1.6
585,362 + 11767 mRNA_3399 0.90 -0.3
585,451 + -0.6
585,474 - 0.9
585,514 - 0.7
585,613 - 0.2
585,629 + 0.2
585,638 + 0.9
585,670 + -0.0
585,767 + -0.3
585,777 - 2.9
585,792 - 0.4
585,803 + -0.0
586,039 - 11768 mRNA_3400 0.12 0.3
587,250 - 11768 mRNA_3400 0.84 0.4
587,294 + 11768 mRNA_3400 0.86 0.1
587,300 - 11768 mRNA_3400 0.87 -0.6
587,357 - 0.3
587,397 - 0.2
587,412 + -1.1
587,414 + 0.8
587,414 + -0.2
587,419 + -0.0
587,461 - 1.0
587,466 - 0.3
587,473 - 1.7
587,490 - -0.3
587,535 + 1.5
587,535 - -0.6
587,535 + -0.8
587,551 - 0.3
587,551 + 0.5
587,562 + -1.4
587,564 - 0.1
587,564 - 0.0
587,565 - 0.4
587,569 - -0.7
587,570 + 0.4
587,574 - 0.2
587,581 - 0.3
587,581 - 1.0
587,583 - -0.7
587,593 - -0.9
587,595 - 1.9
587,595 - 0.1
587,600 - 1.1