Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3391

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3390: 11758 - K06617 E2.4.1.82 raffinose synthase, at 564328 to 568075 11758 mRNA_3391: 11759 - Hypothetical Protein, at 568755 to 569736 11759 mRNA_3392: 11760 - HMMPfam-Caffeine-induced death protein 2-PF09774, at 570084 to 570935 11760

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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567,992 + 0.4
568,107 + 0.1
568,123 - 0.2
568,129 - 0.1
568,134 - 1.1
568,145 - -0.5
568,150 + -0.2
568,169 + -0.1
568,171 + 1.3
568,185 - 0.4
568,306 + -0.3
568,453 - 1.3
568,903 + 11759 mRNA_3391 0.15 0.0
569,054 - 11759 mRNA_3391 0.30 0.5
569,180 + 11759 mRNA_3391 0.43 -0.2
569,370 + 11759 mRNA_3391 0.63 1.0
569,477 + 11759 mRNA_3391 0.74 0.5
569,477 - 11759 mRNA_3391 0.74 1.7
569,618 + 11759 mRNA_3391 0.88 0.5
569,639 - 2.1
569,780 - 1.7
569,781 + 2.0
569,791 + 1.7
569,795 - 0.4
569,799 - 1.2
569,803 + 0.9
569,814 - 0.5
569,860 - -0.2
569,864 + 0.9
569,877 + 0.9
569,987 - 2.2
570,007 - 1.1
570,108 - 0.9
570,281 - 11760 mRNA_3392 0.23 0.1
570,566 - 11760 mRNA_3392 0.57 1.5