Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3374

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3373: 11741 - K00390 cysH phosphoadenosine phosphosulfate reductase, at 523671 to 524664 11741 mRNA_3374: 11742 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 525330 to 527850 11742 mRNA_3375: 11743 - Hypothetical Protein, at 528388 to 528831 11743

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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524,490 + 11741 mRNA_3373 0.82 0.1
524,504 - 11741 mRNA_3373 0.84 0.5
524,553 - 11741 mRNA_3373 0.89 -2.2
524,647 - -0.3
524,675 - -0.7
524,703 + 0.1
524,825 - -0.2
524,833 - -0.5
524,834 - 2.0
524,838 + -1.8
524,839 + 0.1
524,843 - -0.1
524,843 - 0.3
524,849 - -0.0
524,850 + -0.0
524,850 + 0.1
524,853 - 0.6
524,856 - -0.0
524,860 - -0.4
524,861 + 0.5
524,863 + 1.1
524,864 - 0.3
524,867 - -0.1
524,874 - 2.4
524,878 - 0.7
524,896 - 0.3
524,903 + -0.6
524,909 + -0.5
524,922 - 0.5
524,923 + 1.4
524,966 - 0.5
525,046 - 2.0
525,046 + -1.3
525,053 - 1.0
525,068 - -0.9
525,071 - 1.2
525,078 + 1.9
525,078 - -0.5
525,079 + -0.0
525,080 + -1.1
525,080 + 0.5
525,090 - 0.5
525,094 - -0.4
525,101 + 0.9
525,102 + 0.5
525,126 + 0.0
525,151 + 0.2
525,187 - -1.3
525,216 - -0.8
525,237 - -0.2
525,240 + 2.4
525,256 + 1.1
525,291 - 0.1
525,310 + 0.4
525,326 + 0.8
525,367 + -0.1
525,367 + 1.0
525,497 + 0.4
525,642 - 11742 mRNA_3374 0.12 0.2
526,322 - 11742 mRNA_3374 0.39 1.1
526,331 + 11742 mRNA_3374 0.40 0.8
527,072 + 11742 mRNA_3374 0.69 0.7
527,188 + 11742 mRNA_3374 0.74 0.2
527,210 - 11742 mRNA_3374 0.75 2.5
527,323 + 11742 mRNA_3374 0.79 0.6
527,475 - 11742 mRNA_3374 0.85 1.0
527,483 - 11742 mRNA_3374 0.85 0.1
527,486 + 11742 mRNA_3374 0.86 1.7
527,776 - 0.1
527,799 - 2.2
527,810 - 1.3
527,922 + 0.9
527,997 + -1.3
528,021 - 1.5
528,022 - 0.8
528,038 + -0.7
528,061 + -0.2
528,071 - 0.7
528,091 + -0.3
528,091 - 0.0
528,182 - 0.4
528,236 + -0.2
528,359 - -0.4
528,401 + 2.4
528,486 - 11743 mRNA_3375 0.22 0.7
528,667 + 11743 mRNA_3375 0.63 -0.1
528,845 + -0.4
528,846 + 2.3