Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3370

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3369: 11737 - KOG2659 LisH motif-containing protein, at 511919 to 513281 11737 mRNA_3370: 11738 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 513932 to 515418 11738 mRNA_3371: 11739 - K13806 DAGL sn1-specific diacylglycerol lipase, at 516330 to 521387 11739

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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513,086 - 11737 mRNA_3369 0.86 2.0
513,095 + 11737 mRNA_3369 0.86 -0.1
513,120 + 11737 mRNA_3369 0.88 0.2
513,270 + 0.8
513,338 - 0.2
513,349 + -1.1
513,375 - -0.7
513,379 + 0.4
513,384 - -0.3
513,386 + -0.7
513,402 - -0.2
513,529 + 1.2
513,541 + 0.3
513,640 - 0.5
513,691 + -2.0
513,838 - 0.5
513,848 + -0.8
513,934 - 1.1
513,960 - -0.3
514,002 - -0.4
514,012 + 0.1
514,104 - 11738 mRNA_3370 0.12 -1.2
514,110 + 11738 mRNA_3370 0.12 0.7
514,112 - 11738 mRNA_3370 0.12 0.8
514,116 + 11738 mRNA_3370 0.12 1.7
514,118 - 11738 mRNA_3370 0.13 1.0
514,256 + 11738 mRNA_3370 0.22 0.2
514,277 - 11738 mRNA_3370 0.23 -0.5
514,363 + 11738 mRNA_3370 0.29 -0.3
514,412 + 11738 mRNA_3370 0.32 0.3
514,423 - 11738 mRNA_3370 0.33 0.7
514,465 + 11738 mRNA_3370 0.36 -0.3
514,576 + 11738 mRNA_3370 0.43 1.5
514,586 + 11738 mRNA_3370 0.44 0.7
514,703 - 11738 mRNA_3370 0.52 0.5
514,865 + 11738 mRNA_3370 0.63 1.3
514,872 + 11738 mRNA_3370 0.63 -0.7
515,010 - 11738 mRNA_3370 0.72 1.0
515,136 + 11738 mRNA_3370 0.81 -0.6
515,183 + 11738 mRNA_3370 0.84 1.5
515,287 - 0.3
515,319 - 1.1
515,329 - -0.3
515,473 + 1.8
515,483 + -1.5
515,485 + 2.1
515,505 + 0.5
515,526 + -0.6
515,583 - -0.2
515,593 + 1.9
515,611 - 0.5
515,638 - 1.1
515,639 - 1.3
515,639 - 1.2
515,642 + 0.9
515,642 - 2.8
515,645 + -1.0
515,647 + -0.3
515,648 + 3.8
515,648 + 0.8
515,648 + -1.6
515,652 - 1.2
515,656 - 1.7
515,658 + -0.4
515,660 + 1.4
515,667 + -0.6
515,669 + -0.1
515,674 - 0.1
515,677 - 0.3
515,677 + -0.0
515,683 + -0.0
515,690 + 0.0
515,710 + 2.6
515,729 - 0.4
515,772 - 0.7
515,875 + -0.6
515,881 - 1.0
515,881 - -0.1
515,881 + -0.7
515,881 - 1.7
515,881 - 1.4
515,882 + 0.3
515,882 - 1.1
515,896 - -0.1
515,901 + -1.3
515,902 + 0.3
515,902 + 0.0
515,905 + 2.5
515,908 - -1.0
515,914 - 1.9
515,914 + 0.9
515,914 - 0.1
515,919 + 1.8
515,920 - 1.8
515,926 + 0.1
515,935 - -0.2
515,940 + 0.6
515,941 - 1.2
515,947 - 0.9
516,164 - 0.5
516,356 - 0.2
516,369 - 0.2