Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3369

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3368: 11736 - Hypothetical Protein, at 508534 to 511308 11736 mRNA_3369: 11737 - KOG2659 LisH motif-containing protein, at 511919 to 513281 11737 mRNA_3370: 11738 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 513932 to 515418 11738

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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510,988 - 11736 mRNA_3368 0.88 1.1
511,063 - 0.1
511,071 + -0.3
511,156 + 0.2
511,260 - -1.1
511,277 - 1.1
511,298 - -0.6
511,299 - 0.2
511,303 - -0.4
511,312 + -0.8
511,320 + -0.6
511,328 + -0.0
511,340 - 0.9
511,385 + -0.9
511,400 - -0.6
511,414 - 1.4
511,429 - 1.5
511,429 - 1.2
511,454 + -0.9
511,459 + -0.5
511,477 + -0.7
511,563 + 1.5
511,604 + 1.1
511,634 + 1.8
511,644 - -0.3
511,739 - 2.3
511,782 + 1.1
511,796 - 1.4
511,885 + -0.2
511,933 - 1.4
512,243 - 11737 mRNA_3369 0.24 2.7
512,483 + 11737 mRNA_3369 0.41 -0.3
512,642 - 11737 mRNA_3369 0.53 -0.7
512,826 + 11737 mRNA_3369 0.67 -0.2
512,896 + 11737 mRNA_3369 0.72 -0.5
513,086 - 11737 mRNA_3369 0.86 2.0
513,095 + 11737 mRNA_3369 0.86 -0.1
513,120 + 11737 mRNA_3369 0.88 0.2
513,270 + 0.8
513,338 - 0.2
513,349 + -1.1
513,375 - -0.7
513,379 + 0.4
513,384 - -0.3
513,386 + -0.7
513,402 - -0.2
513,529 + 1.2
513,541 + 0.3
513,640 - 0.5
513,691 + -2.0
513,838 - 0.5
513,848 + -0.8
513,934 - 1.1
513,960 - -0.3
514,002 - -0.4
514,012 + 0.1
514,104 - 11738 mRNA_3370 0.12 -1.2
514,110 + 11738 mRNA_3370 0.12 0.7
514,112 - 11738 mRNA_3370 0.12 0.8
514,116 + 11738 mRNA_3370 0.12 1.7
514,118 - 11738 mRNA_3370 0.13 1.0
514,256 + 11738 mRNA_3370 0.22 0.2
514,277 - 11738 mRNA_3370 0.23 -0.5