Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3362

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3361: 11729 - K11247 SH3GL endophilin-A, at 494941 to 495602 11729 mRNA_3362: 11730 - BLAST vacuolar assembly/sorting protein DID2 [Moesziomyces ..., at 495992 to 499759 11730 mRNA_3363: 11731 - K02871 RP-L13, MRPL13, rplM large subunit ribosomal protein L13, at 499965 to 500841 11731

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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495,112 - 11729 mRNA_3361 0.26 0.1
495,158 + 11729 mRNA_3361 0.33 -0.1
495,239 - 11729 mRNA_3361 0.45 -0.0
495,284 + 11729 mRNA_3361 0.52 -0.5
495,868 - -0.7
495,894 - 0.2
495,999 + 0.3
496,002 - -0.2
496,156 + -0.7
496,156 - -0.1
496,185 - -0.7
496,295 - 0.5
496,487 - 11730 mRNA_3362 0.13 1.1
496,487 - 11730 mRNA_3362 0.13 0.3
496,605 - 11730 mRNA_3362 0.16 -0.1
496,653 + 11730 mRNA_3362 0.18 -0.1
496,767 + 11730 mRNA_3362 0.21 0.4
496,820 - 11730 mRNA_3362 0.22 1.0
496,902 + 11730 mRNA_3362 0.24 0.6
497,014 + 11730 mRNA_3362 0.27 -1.2
497,440 + 11730 mRNA_3362 0.38 0.3
497,452 - 11730 mRNA_3362 0.39 -0.3
497,549 - 11730 mRNA_3362 0.41 1.2
497,621 + 11730 mRNA_3362 0.43 -1.2
497,682 - 11730 mRNA_3362 0.45 1.5
497,937 + 11730 mRNA_3362 0.52 0.7
497,964 + 11730 mRNA_3362 0.52 2.5
498,092 + 11730 mRNA_3362 0.56 0.8
498,256 + 11730 mRNA_3362 0.60 1.4
498,355 - 11730 mRNA_3362 0.63 3.5
498,545 + 11730 mRNA_3362 0.68 0.2
498,561 + 11730 mRNA_3362 0.68 -1.3
498,673 + 11730 mRNA_3362 0.71 -1.3
498,847 - 11730 mRNA_3362 0.76 -0.1
498,915 + 11730 mRNA_3362 0.78 -1.7
498,943 + 11730 mRNA_3362 0.78 1.0
499,063 + 11730 mRNA_3362 0.82 -2.0
499,066 - 11730 mRNA_3362 0.82 1.1
499,066 - 11730 mRNA_3362 0.82 0.1
499,125 - 11730 mRNA_3362 0.83 0.5
499,249 + 11730 mRNA_3362 0.86 -0.4
499,266 + 11730 mRNA_3362 0.87 -0.0
499,435 + 2.1
499,459 - -0.2
499,554 - 2.3
499,557 + 0.9
499,700 - 1.2
499,701 - -0.3
499,708 + 0.2
499,719 - 0.9
499,860 - 3.1
499,872 + -0.2
499,912 - 0.4
499,954 - 0.1
500,007 - 0.3
500,014 - 1.4