Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3355

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3354: 11722 - KOG2395 Protein involved in vacuole import and degradation, at 478400 to 482104 11722 mRNA_3355: 11723 - K01126 E3.1.4.46, glpQ, ugpQ glycerophosphoryl diester phosphodiesterase, at 482754 to 484525 11723 mRNA_3356: 11724 - K19306 BUD23 18S rRNA (guanine1575-N7)-methyltransferase, at 484974 to 486354 11724

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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482,222 - 0.3
482,367 + -1.0
482,380 + 0.8
482,395 - 0.6
482,395 + 1.4
482,405 + 2.2
482,409 - 0.1
482,409 - -0.2
482,422 + -0.3
482,552 + 1.5
482,560 + 1.1
482,565 + 1.7
482,571 - 1.7
482,571 - 1.2
482,585 - -0.7
482,719 - -0.1
482,735 + 0.1
482,866 - 0.9
482,870 - 1.1
482,874 + -0.4
482,900 - 0.6
483,022 - 11723 mRNA_3355 0.15 -1.0
483,025 - 11723 mRNA_3355 0.15 -0.6
483,027 - 11723 mRNA_3355 0.15 -0.2
483,042 + 11723 mRNA_3355 0.16 0.0
483,042 - 11723 mRNA_3355 0.16 -0.0
483,065 - 11723 mRNA_3355 0.18 2.5
483,375 + 11723 mRNA_3355 0.35 -0.3
483,375 - 11723 mRNA_3355 0.35 -0.0
483,692 - 11723 mRNA_3355 0.53 2.3
483,890 + 11723 mRNA_3355 0.64 1.2
484,056 - 11723 mRNA_3355 0.73 0.9
484,207 + 11723 mRNA_3355 0.82 0.1
484,240 + 11723 mRNA_3355 0.84 -0.9
484,513 + -0.3
484,646 - -0.1
484,780 + -1.4
484,808 + -0.3
485,092 - 1.3