Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3320

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3319: 11687 - KOG3854 SPRT-like metalloprotease, at 386428 to 389154 11687 mRNA_3320: 11688 - KOG2493 Na+/Pi symporter, at 389310 to 390792 11688 mRNA_3321: 11689 - Hypothetical Protein, at 391300 to 392689 11689

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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388,502 + 11687 mRNA_3319 0.76 0.1
388,629 + 11687 mRNA_3319 0.81 0.9
388,632 + 11687 mRNA_3319 0.81 0.1
388,638 + 11687 mRNA_3319 0.81 0.6
388,790 + 11687 mRNA_3319 0.87 -0.3
388,930 - 0.0
388,931 + -0.1
389,219 + -0.6
389,236 - 1.2
389,260 - 0.0
389,269 + 1.8
389,271 + 1.6
389,273 - 1.4
389,280 - 0.1
389,280 - 0.9
389,282 + 0.1
389,293 + -0.3
389,344 + 0.2
389,378 + 2.5
389,395 - 0.1
389,407 + -0.2
389,409 - -0.2
389,411 + 0.3
389,411 - 0.8
389,413 - -0.2
389,424 + 1.3
389,425 - -0.2
389,520 + 11688 mRNA_3320 0.14 -0.8
389,568 + 11688 mRNA_3320 0.17 1.0
389,612 + 11688 mRNA_3320 0.20 -0.3
389,684 + 11688 mRNA_3320 0.25 2.3
389,779 - 11688 mRNA_3320 0.32 -0.5
389,864 + 11688 mRNA_3320 0.37 0.2
390,296 + 11688 mRNA_3320 0.66 1.1
390,299 - 11688 mRNA_3320 0.67 0.3
390,434 - 11688 mRNA_3320 0.76 0.7
390,460 + 11688 mRNA_3320 0.78 0.4
390,489 + 11688 mRNA_3320 0.80 0.2
390,634 + 11688 mRNA_3320 0.89 0.1
390,868 - 0.2
391,158 - 0.8
391,320 - 2.2
391,526 - 11689 mRNA_3321 0.16 2.5
391,668 - 11689 mRNA_3321 0.26 0.9
391,789 + 11689 mRNA_3321 0.35 -0.3