Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3316

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3315: 11683 - K18637 AXL2 axial budding pattern protein 2, at 375335 to 379207 11683 mRNA_3316: 11684 - K15223 UAF30, SPP27 upstream activation factor subunit UAF30, at 379574 to 381154 11684 mRNA_3317: 11685 - SUPERFAMILY--SSF52540, at 381412 to 382785 11685

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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378,924 - -0.1
379,125 - 1.1
379,190 + 2.1
379,207 + 0.2
379,230 - -0.4
379,334 - 0.4
379,361 - 2.2
379,366 - 1.1
379,371 - 0.2
379,375 + 1.0
379,487 - 1.7
379,511 - 1.2
379,512 + 1.5
379,524 + 0.2
379,529 - 0.3
379,536 - 1.6
379,712 + -0.7
379,827 + 11684 mRNA_3316 0.16 -1.4
379,828 - 11684 mRNA_3316 0.16 -0.5
379,846 - 11684 mRNA_3316 0.17 -0.4
379,936 + 11684 mRNA_3316 0.23 2.7
380,118 - 11684 mRNA_3316 0.34 -0.5
380,229 - 11684 mRNA_3316 0.41 0.3
380,229 - 11684 mRNA_3316 0.41 2.7
380,229 - 11684 mRNA_3316 0.41 -1.4
380,280 + 11684 mRNA_3316 0.45 1.4
380,581 + 11684 mRNA_3316 0.64 -0.4
380,669 - 11684 mRNA_3316 0.69 0.9
380,839 + 11684 mRNA_3316 0.80 0.6
380,840 - 11684 mRNA_3316 0.80 0.6
380,871 - 11684 mRNA_3316 0.82 1.3
381,127 - 1.1
381,403 + 0.3
381,760 + 11685 mRNA_3317 0.25 1.1
381,860 + 11685 mRNA_3317 0.33 -0.6
381,872 + 11685 mRNA_3317 0.33 0.2
382,024 - 11685 mRNA_3317 0.45 0.5
382,024 + 11685 mRNA_3317 0.45 2.1