Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3255

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3254: 11622 - K12161 URM1 ubiquitin related modifier 1, at 220282 to 220812 11622 mRNA_3255: 11623 - K01711 gmd, GMDS GDPmannose 4,6-dehydratase, at 221213 to 223248 11623

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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220,728 + 11622 mRNA_3254 0.84 -0.6
220,855 + 0.6
220,874 - -0.0
220,883 - 0.4
220,892 + -0.7
220,981 - 1.0
221,012 - -0.1
221,024 - 1.6
221,027 - 0.5
221,285 - 1.5
221,473 + 11623 mRNA_3255 0.13 1.5
221,873 - 11623 mRNA_3255 0.32 0.2
222,298 + 11623 mRNA_3255 0.53 -1.9
222,308 - 11623 mRNA_3255 0.54 2.1
222,317 - 11623 mRNA_3255 0.54 -1.0
222,333 - 11623 mRNA_3255 0.55 0.1
222,342 - 11623 mRNA_3255 0.55 -1.0
222,434 - 11623 mRNA_3255 0.60 0.1
222,452 - 11623 mRNA_3255 0.61 -0.7
222,460 + 11623 mRNA_3255 0.61 0.2
222,729 + 11623 mRNA_3255 0.74 1.7
222,824 - 11623 mRNA_3255 0.79 -0.4
222,882 + 11623 mRNA_3255 0.82 -0.1
222,994 + 11623 mRNA_3255 0.87 1.4
223,005 - 11623 mRNA_3255 0.88 0.3
223,021 + 11623 mRNA_3255 0.89 -1.8
223,038 + 11623 mRNA_3255 0.90 -0.2
223,038 + 11623 mRNA_3255 0.90 0.6
223,040 + 11623 mRNA_3255 0.90 -0.4
223,148 - -0.4
223,162 - -0.5
223,169 - 0.6
223,172 + 1.3
223,321 + -0.1
223,326 + -0.1
223,328 - 0.8
223,343 + 0.1
223,346 - -0.3
223,352 - 0.3
223,361 + -1.4
223,477 - -0.1
223,491 - -2.9
223,494 - -0.3
223,495 - 0.1
223,801 - 0.1
223,956 + -0.2