Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3237

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3236: 11604 - K01755 argH, ASL argininosuccinate lyase, at 173698 to 175795 11604 mRNA_3237: 11605 - K10357 MYO5 myosin V, at 176488 to 184590 11605 mRNA_3238: 11606 - BLAST RNA replication protein [Rhizoctonia solani], at 184726 to 188428 11606

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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175,721 - -2.6
175,861 - -0.3
176,024 - -1.0
176,050 + 0.0
176,179 - -0.4
176,189 - -0.2
176,190 + -0.1
176,192 + -0.2
176,192 + 2.6
176,195 + -0.0
176,198 - 1.3
176,203 + 0.1
176,209 - -0.4
176,216 - 0.2
176,319 + 2.4
176,327 + -0.5
176,329 - 1.2
176,329 - -0.8
176,335 + 0.5
176,343 + -0.1
176,345 + 0.4
176,346 - 0.5
176,347 - 0.1
176,348 + 0.0
176,350 + 1.4
176,351 - -0.0
176,361 + 1.2
176,371 + 1.7
176,379 + 0.3
176,502 - 0.9
176,510 - 1.4
176,579 - 0.4
176,615 - 1.6
176,643 + -0.2
177,108 + 1.4
177,378 - 11605 mRNA_3237 0.11 -0.5
177,417 + 11605 mRNA_3237 0.11 0.5
177,532 + 11605 mRNA_3237 0.13 -0.4
177,642 + 11605 mRNA_3237 0.14 1.8
177,650 - 11605 mRNA_3237 0.14 0.9
178,762 + 11605 mRNA_3237 0.28 1.2
178,933 + 11605 mRNA_3237 0.30 1.2
178,941 + 11605 mRNA_3237 0.30 1.4
179,003 - 11605 mRNA_3237 0.31 0.4
179,481 + 11605 mRNA_3237 0.37 0.1
179,868 - 11605 mRNA_3237 0.42 0.9
179,951 + 11605 mRNA_3237 0.43 -0.4
180,518 - 11605 mRNA_3237 0.50 2.1
180,524 + 11605 mRNA_3237 0.50 -2.6
180,575 - 11605 mRNA_3237 0.50 0.7
181,225 - 11605 mRNA_3237 0.58 -1.1
181,372 + 11605 mRNA_3237 0.60 1.5
181,528 - 11605 mRNA_3237 0.62 1.0
181,796 + 11605 mRNA_3237 0.66 0.4
182,306 - 11605 mRNA_3237 0.72 0.2
182,393 + 11605 mRNA_3237 0.73 0.3
182,412 + 11605 mRNA_3237 0.73 1.9
182,547 + 11605 mRNA_3237 0.75 0.2
182,665 + 11605 mRNA_3237 0.76 0.7
182,675 + 11605 mRNA_3237 0.76 -0.1
182,686 - 11605 mRNA_3237 0.76 -0.4
182,699 - 11605 mRNA_3237 0.77 0.1
182,724 - 11605 mRNA_3237 0.77 -0.0
182,740 + 11605 mRNA_3237 0.77 0.8
182,740 + 11605 mRNA_3237 0.77 0.4
182,769 - 11605 mRNA_3237 0.78 -0.5
182,772 - 11605 mRNA_3237 0.78 -0.1
182,796 - 11605 mRNA_3237 0.78 0.6
182,893 - 11605 mRNA_3237 0.79 -0.1
182,895 - 11605 mRNA_3237 0.79 0.2
182,904 + 11605 mRNA_3237 0.79 1.5
183,038 + 11605 mRNA_3237 0.81 -0.1
183,056 - 11605 mRNA_3237 0.81 0.5
183,318 - 11605 mRNA_3237 0.84 0.4
183,873 - -0.6
184,060 + -1.7
184,071 - 1.5
184,499 - -0.7
184,501 + -0.4
184,503 + -0.6
184,538 + -0.5
184,766 - -0.7
184,777 + -0.3
184,797 + 0.8
184,834 - 0.7
184,931 + 0.5
184,949 + 1.0
185,051 + -0.1
185,414 - 11606 mRNA_3238 0.19 -0.1
185,529 + 11606 mRNA_3238 0.22 -1.1
185,540 + 11606 mRNA_3238 0.22 -0.3
185,547 + 11606 mRNA_3238 0.22 -0.2