Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3231

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3230: 11598 - HMMPfam-Region of unknown function (DUF2417)-PF10329, at 155480 to 157759 11598 mRNA_3231: 11599 - KOG1430 C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases, at 157802 to 159637 11599 mRNA_3232: 11600 - ProSiteProfiles-BRCT domain profile.-PS50172, at 159953 to 161045 11600

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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157,016 + 11598 mRNA_3230 0.67 0.6
157,148 - 11598 mRNA_3230 0.73 -0.3
157,158 - 11598 mRNA_3230 0.74 0.4
157,302 - 11598 mRNA_3230 0.80 1.4
157,320 + 11598 mRNA_3230 0.81 -1.1
157,324 - 11598 mRNA_3230 0.81 0.8
157,453 - 11598 mRNA_3230 0.87 0.2
157,461 - 11598 mRNA_3230 0.87 -0.2
157,468 + 11598 mRNA_3230 0.87 0.0
157,617 - -0.4
157,627 + 2.8
157,629 - 1.3
157,665 - 0.7
157,672 + -2.2
157,676 + 1.7
157,679 + 1.8
157,710 - 0.9
157,923 - 0.9
158,269 + 11599 mRNA_3231 0.25 -0.2
158,379 + 11599 mRNA_3231 0.31 0.9
158,724 + 11599 mRNA_3231 0.50 -0.8
158,799 + 11599 mRNA_3231 0.54 -1.4
158,837 - 11599 mRNA_3231 0.56 -1.5
158,847 + 11599 mRNA_3231 0.57 0.6
159,272 + 11599 mRNA_3231 0.80 0.1
159,410 - 11599 mRNA_3231 0.88 -0.5
159,517 - 0.2
159,523 - 2.1
159,685 + -0.2
159,730 - 0.6
159,843 + -0.5
159,847 - 0.6
159,855 + -0.6
159,860 - 0.1
159,951 + -0.6
159,987 - 1.1
159,999 - -0.7
160,004 - -1.9
160,152 - 11600 mRNA_3232 0.18 -0.3
160,305 + 11600 mRNA_3232 0.32 1.2