Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3200

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3199: 11567 - K12881 THOC4, ALY THO complex subunit 4, at 71378 to 73355 11567 mRNA_3200: 11568 - KOG1515 Arylacetamide deacetylase, at 73993 to 76977 11568 mRNA_3201: 11569 - K12175 GPS1, COPS1, CSN1 COP9 signalosome complex subunit 1, at 77177 to 79098 11569

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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73,619 + 0.1
73,622 - 0.8
73,623 + -0.4
73,624 + -0.3
73,625 - -0.0
73,641 + 1.6
73,645 + -0.5
73,645 - 0.1
73,646 + -0.5
73,649 - -0.8
73,660 + 0.3
73,667 + 0.3
73,669 - 1.2
73,780 - 0.8
73,783 - -0.5
73,788 + 0.7
73,808 - 2.0
73,813 - 0.1
73,825 + 0.2
73,845 + -1.1
73,950 + 1.9
73,950 + 0.1
73,969 + -0.4
73,974 - -1.7
74,713 - 11568 mRNA_3200 0.24 0.5
75,424 + 11568 mRNA_3200 0.48 1.4
75,554 + 11568 mRNA_3200 0.52 -1.1
75,623 + 11568 mRNA_3200 0.55 0.7
75,728 + 11568 mRNA_3200 0.58 -0.9
75,751 - 11568 mRNA_3200 0.59 -0.1
75,880 + 11568 mRNA_3200 0.63 -0.8
75,927 + 11568 mRNA_3200 0.65 -0.3
76,071 - 11568 mRNA_3200 0.70 -0.0
76,082 + 11568 mRNA_3200 0.70 1.9
76,167 - 11568 mRNA_3200 0.73 -0.1
76,341 - 11568 mRNA_3200 0.79 -0.1
76,346 - 11568 mRNA_3200 0.79 0.4
76,397 + 11568 mRNA_3200 0.81 0.7
76,460 - 11568 mRNA_3200 0.83 -1.1
76,649 + 11568 mRNA_3200 0.89 0.8
76,954 - -0.0
76,966 - 1.3
76,976 + -0.2
76,992 - -0.2
76,992 - -0.6
76,992 - -0.7
76,999 + -1.2
77,084 - 0.8
77,240 - 0.1
77,250 - -0.7
77,369 - -0.4
77,380 + 11569 mRNA_3201 0.11 0.7
77,649 - 11569 mRNA_3201 0.25 -0.8
77,832 + 11569 mRNA_3201 0.34 0.3
77,883 + 11569 mRNA_3201 0.37 1.0