Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3197

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3196: 11564 - Hypothetical Protein, at 62107 to 63896 11564 mRNA_3197: 11565 - BLAST similar to An12g07160 [Aspergillus kawachii IFO 4308], at 64392 to 66116 11565 mRNA_3198: 11566 - K20176 SGSM3, MAP small G protein signaling modulator 3, at 66778 to 71121 11566

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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63,395 - 11564 mRNA_3196 0.72 0.2
63,417 + 11564 mRNA_3196 0.73 2.4
63,428 + 11564 mRNA_3196 0.74 0.3
63,435 - 11564 mRNA_3196 0.74 -0.3
63,974 - 1.8
63,975 - -0.0
63,982 - 0.2
63,983 + -0.7
64,042 - 1.8
64,044 - 2.1
64,116 - -0.2
64,118 - -0.2
64,124 + -0.7
64,172 + 0.7
64,178 - -1.4
64,184 - 1.3
64,304 + -0.2
64,312 + 0.2
64,316 - 0.9
64,322 + 0.8
64,330 + 0.3
64,449 - 0.2
64,462 - -0.1
64,473 + -0.2
64,728 + 11565 mRNA_3197 0.19 0.7
64,742 + 11565 mRNA_3197 0.20 -0.3
65,054 - 11565 mRNA_3197 0.38 0.3
65,168 + 11565 mRNA_3197 0.45 1.7
65,365 + 11565 mRNA_3197 0.56 0.4
65,499 - 11565 mRNA_3197 0.64 3.0
65,906 - 11565 mRNA_3197 0.88 -0.3
65,930 - 11565 mRNA_3197 0.89 0.0
65,939 + 11565 mRNA_3197 0.90 0.6
66,088 + 2.5
66,202 - 1.5
66,216 - 0.7
66,268 - 0.5
66,351 + 0.3
66,632 - -1.4
66,665 + 2.9
66,697 - 0.3
66,927 - -0.0