Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3181

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3180: 11548 - ProSitePatterns-Zinc finger RanBP2-type signature.-PS01358,SUPERFAMILY--SSF90209, at 29208 to 30655 11548 mRNA_3181: 11549 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 30988 to 32695 11549 mRNA_3182: 11550 - KOG1575 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB, at 33172 to 34723 11550

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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30,145 - 11548 mRNA_3180 0.65 0.4
30,182 + 11548 mRNA_3180 0.67 -1.0
30,281 + 11548 mRNA_3180 0.74 0.3
30,285 - 11548 mRNA_3180 0.74 2.5
30,341 + 11548 mRNA_3180 0.78 2.6
30,446 - 11548 mRNA_3180 0.85 -0.4
30,583 - 0.8
30,602 - -0.7
30,725 + -0.4
30,812 + -0.2
30,890 - 0.2
30,897 + -0.0
31,018 - 2.2
31,022 - 0.1
31,272 + 11549 mRNA_3181 0.17 -0.3
31,364 - 11549 mRNA_3181 0.22 0.5
31,756 - 11549 mRNA_3181 0.45 -0.6
31,759 - 11549 mRNA_3181 0.45 -0.1
31,938 + 11549 mRNA_3181 0.56 1.5
32,444 + 11549 mRNA_3181 0.85 -0.4
32,630 - -0.6
32,646 - 0.1
32,777 + 0.4
32,780 - 0.7
32,912 + 1.2
32,929 + -0.6
32,933 - -1.3
32,985 - 0.3
32,996 + 1.2
32,999 + 1.0
33,009 - 0.5
33,011 + -0.5
33,092 - -0.2
33,150 - 1.1
33,315 - -0.0
33,325 + -0.3
33,326 + -1.0
33,328 - 11550 mRNA_3182 0.10 1.1
33,329 + 11550 mRNA_3182 0.10 -0.4
33,422 + 11550 mRNA_3182 0.16 0.0
33,422 + 11550 mRNA_3182 0.16 0.6
33,424 - 11550 mRNA_3182 0.16 0.8
33,590 + 11550 mRNA_3182 0.27 0.1
33,593 - 11550 mRNA_3182 0.27 -0.2
33,596 - 11550 mRNA_3182 0.27 -0.5
33,602 + 11550 mRNA_3182 0.28 -0.5
33,602 + 11550 mRNA_3182 0.28 1.1
33,623 + 11550 mRNA_3182 0.29 -1.6
33,691 + 11550 mRNA_3182 0.33 -1.1
33,691 + 11550 mRNA_3182 0.33 0.1