Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3180

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3179: 11547 - Hypothetical Protein, at 26940 to 28412 11547 mRNA_3180: 11548 - ProSitePatterns-Zinc finger RanBP2-type signature.-PS01358,SUPERFAMILY--SSF90209, at 29208 to 30655 11548 mRNA_3181: 11549 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 30988 to 32695 11549

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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28,463 - -1.3
28,508 + -0.3
28,511 - -0.7
28,524 - 1.1
28,942 - 0.8
29,127 + 2.5
29,282 + 0.5
29,324 - -0.1
29,333 - 0.5
29,552 + 11548 mRNA_3180 0.24 1.3
29,627 - 11548 mRNA_3180 0.29 1.2
29,691 + 11548 mRNA_3180 0.33 0.1
29,701 + 11548 mRNA_3180 0.34 1.1
29,808 - 11548 mRNA_3180 0.41 0.8
29,817 - 11548 mRNA_3180 0.42 0.3
29,820 + 11548 mRNA_3180 0.42 -2.1
29,829 - 11548 mRNA_3180 0.43 -0.9
29,830 + 11548 mRNA_3180 0.43 1.7
29,832 - 11548 mRNA_3180 0.43 -0.3
29,845 + 11548 mRNA_3180 0.44 0.9
29,943 - 11548 mRNA_3180 0.51 0.5
30,145 - 11548 mRNA_3180 0.65 0.4
30,182 + 11548 mRNA_3180 0.67 -1.0
30,281 + 11548 mRNA_3180 0.74 0.3
30,285 - 11548 mRNA_3180 0.74 2.5
30,341 + 11548 mRNA_3180 0.78 2.6
30,446 - 11548 mRNA_3180 0.85 -0.4
30,583 - 0.8
30,602 - -0.7
30,725 + -0.4
30,812 + -0.2
30,890 - 0.2
30,897 + -0.0
31,018 - 2.2
31,022 - 0.1
31,272 + 11549 mRNA_3181 0.17 -0.3
31,364 - 11549 mRNA_3181 0.22 0.5