Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3177

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3176: 11544 - K17301 COPB1, SEC26 coatomer subunit beta, at 17776 to 21807 11544 mRNA_3177: 11545 - KOG2164 Predicted E3 ubiquitin ligase, at 22085 to 24622 11545 mRNA_3178: 11546 - KOG4561 Uncharacterized conserved protein, contains TBC domain, at 25091 to 26696 11546

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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21,929 + -0.4
21,953 - 0.2
21,975 + 0.4
21,994 + -0.6
22,079 - 1.4
22,136 + 1.3
22,142 + -0.1
22,231 - 0.2
22,496 - 11545 mRNA_3177 0.16 0.5
22,573 + 11545 mRNA_3177 0.19 1.6
22,583 - 11545 mRNA_3177 0.20 0.7
22,589 - 11545 mRNA_3177 0.20 -1.9
22,737 + 11545 mRNA_3177 0.26 0.6
22,986 - 11545 mRNA_3177 0.36 -0.6
22,996 + 11545 mRNA_3177 0.36 1.4
23,165 - 11545 mRNA_3177 0.43 -0.6
23,429 + 11545 mRNA_3177 0.53 1.1
23,519 - 11545 mRNA_3177 0.57 -1.8
23,581 + 11545 mRNA_3177 0.59 0.7
23,673 - 11545 mRNA_3177 0.63 3.1
23,690 + 11545 mRNA_3177 0.63 0.2
23,999 - 11545 mRNA_3177 0.75 -1.4
24,006 + 11545 mRNA_3177 0.76 0.9
24,234 - 11545 mRNA_3177 0.85 -0.0
24,650 + 0.1
24,736 + 1.5
24,877 + 0.8
25,088 + -1.9
25,294 + 11546 mRNA_3178 0.13 1.5
25,308 + 11546 mRNA_3178 0.14 0.1
25,401 - 11546 mRNA_3178 0.19 -1.3
25,575 + 11546 mRNA_3178 0.30 1.0