Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3175

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3174: 11542 - K00953 FLAD1 FAD synthetase, at 10754 to 11960 11542 mRNA_3175: 11543 - K01191 E3.2.1.24 alpha-mannosidase, at 12407 to 17406 11543 mRNA_3176: 11544 - K17301 COPB1, SEC26 coatomer subunit beta, at 17776 to 21807 11544

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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11,991 + 1.3
12,077 + 0.1
12,411 + -0.1
12,584 + 0.9
12,995 + 11543 mRNA_3175 0.12 0.6
13,364 - 11543 mRNA_3175 0.19 -0.2
13,388 - 11543 mRNA_3175 0.20 0.3
13,408 + 11543 mRNA_3175 0.20 2.0
13,424 + 11543 mRNA_3175 0.20 -1.6
13,509 - 11543 mRNA_3175 0.22 0.3
13,543 + 11543 mRNA_3175 0.23 1.6
13,605 + 11543 mRNA_3175 0.24 0.2
13,714 - 11543 mRNA_3175 0.26 0.6
13,818 + 11543 mRNA_3175 0.28 1.2
13,845 - 11543 mRNA_3175 0.29 -0.7
14,006 - 11543 mRNA_3175 0.32 0.3
14,112 + 11543 mRNA_3175 0.34 0.7
14,133 + 11543 mRNA_3175 0.35 1.7
14,250 - 11543 mRNA_3175 0.37 1.4
14,270 - 11543 mRNA_3175 0.37 -1.1
14,290 + 11543 mRNA_3175 0.38 0.6
14,290 + 11543 mRNA_3175 0.38 0.5
14,292 - 11543 mRNA_3175 0.38 1.4
14,387 - 11543 mRNA_3175 0.40 0.7
14,397 - 11543 mRNA_3175 0.40 0.7
14,425 - 11543 mRNA_3175 0.40 -0.3
14,599 + 11543 mRNA_3175 0.44 1.1
14,713 - 11543 mRNA_3175 0.46 0.3
14,956 + 11543 mRNA_3175 0.51 3.2
15,195 - 11543 mRNA_3175 0.56 1.1
15,196 + 11543 mRNA_3175 0.56 2.8
15,249 + 11543 mRNA_3175 0.57 0.2
15,288 - 11543 mRNA_3175 0.58 1.2
15,289 + 11543 mRNA_3175 0.58 1.3
15,548 - 11543 mRNA_3175 0.63 -0.7
15,560 + 11543 mRNA_3175 0.63 0.7
15,848 + 11543 mRNA_3175 0.69 0.4
16,181 + 11543 mRNA_3175 0.75 0.4
16,270 - 11543 mRNA_3175 0.77 0.1
16,290 + 11543 mRNA_3175 0.78 0.8
16,379 - 11543 mRNA_3175 0.79 -0.2
16,389 + 11543 mRNA_3175 0.80 -0.2
16,414 + 11543 mRNA_3175 0.80 0.1
16,869 - 11543 mRNA_3175 0.89 -0.0
17,120 - 0.2
17,136 - -0.2
17,151 - 0.3
17,239 + 1.5
17,276 - -1.0
17,290 - -0.7
17,299 + 1.0
17,310 + 0.5
17,316 - 0.7
17,445 - 0.2
17,463 + 0.9
17,479 + 1.2
17,581 - 1.0
17,605 - -0.5
17,607 - 0.7
17,616 + 1.3
17,631 - 1.8
17,712 - -0.0
17,739 - 0.2
17,742 - 2.8
17,772 - -0.1