Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2174 to 3237 11538

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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12 + 0.8
12 + 0.6
15 + 1.9
16 + 1.2
18 + -0.4
22 + 0.9
25 + 2.1
57 - -0.2
61 - 0.2
62 + -0.2
62 + 0.5
66 + 0.3
72 + -0.2
72 + -0.4
72 + -1.0
75 + 1.4
78 - 1.5
105 + 0.8
110 - -1.6
114 + -0.1
115 + -0.4
118 + 0.6
122 + -0.4
122 - 0.6
124 + 0.6
135 + 1.3
147 + -0.1
157 + 2.8
161 + 0.1
168 + -0.8
174 + 0.4
177 - -1.0
228 + -1.5
247 + 1.8
252 - -0.3
253 - 1.1
255 + -0.3
258 + -0.1
264 - 0.8
269 + 0.1
269 - 0.2
274 + -0.5
275 - 0.5
277 + 0.9
280 + -1.8
280 + 0.1
283 - -0.1
285 - 1.0
287 + -1.3
287 + 1.6
288 + 0.3
292 - -1.3
293 + 0.4
298 + -0.3
305 - 0.2
314 + -0.9
320 + -0.5
368 + 0.4
370 - 0.6
372 + 0.4
382 + 0.5
384 + 0.8
391 + 1.0
391 - -1.1
397 + 2.8
397 - 0.2
402 + 2.1
405 + 0.8
423 - -0.6
430 + 1.6
440 + 1.8
446 + -0.1
470 + 0.6
524 + -0.7
532 + 0.1
545 - 1.9
557 + 0.9
569 + 1.1
570 - 1.3
583 + 0.1
584 + 1.6
603 - 0.3
603 + 0.1
634 - 11537 mRNA_3169 0.11 0.8
636 + 11537 mRNA_3169 0.11 0.9
646 + 11537 mRNA_3169 0.12 0.2
661 + 11537 mRNA_3169 0.13 0.4
667 + 11537 mRNA_3169 0.14 0.4
698 + 11537 mRNA_3169 0.17 -0.0
704 - 11537 mRNA_3169 0.18 -0.6
705 - 11537 mRNA_3169 0.18 2.4
721 - 11537 mRNA_3169 0.19 0.2
725 + 11537 mRNA_3169 0.20 0.6
738 - 11537 mRNA_3169 0.21 0.0
849 + 11537 mRNA_3169 0.32 0.0
871 + 11537 mRNA_3169 0.34 -1.5
883 + 11537 mRNA_3169 0.35 2.1
894 + 11537 mRNA_3169 0.37 -0.5
895 + 11537 mRNA_3169 0.37 -0.1
922 + 11537 mRNA_3169 0.39 0.9
965 - 11537 mRNA_3169 0.44 -0.3
1,012 - 11537 mRNA_3169 0.48 0.9
1,026 + 11537 mRNA_3169 0.50 -0.5
1,026 + 11537 mRNA_3169 0.50 -0.2
1,105 + 11537 mRNA_3169 0.58 -0.2
1,123 + 11537 mRNA_3169 0.60 0.7
1,141 + 11537 mRNA_3169 0.61 -0.1
1,142 + 11537 mRNA_3169 0.61 1.7
1,165 + 11537 mRNA_3169 0.64 0.9
1,174 - 11537 mRNA_3169 0.65 1.0
1,174 + 11537 mRNA_3169 0.65 2.2
1,259 + 11537 mRNA_3169 0.73 1.3
1,265 + 11537 mRNA_3169 0.74 0.4
1,268 + 11537 mRNA_3169 0.74 0.9
1,269 - 11537 mRNA_3169 0.74 -0.8
1,288 - 11537 mRNA_3169 0.76 -0.7
1,297 + 11537 mRNA_3169 0.77 -1.5
1,303 - 11537 mRNA_3169 0.78 0.2
1,399 + 11537 mRNA_3169 0.87 0.3
1,412 - 11537 mRNA_3169 0.88 -0.3
1,419 - 11537 mRNA_3169 0.89 -0.0
1,423 - 11537 mRNA_3169 0.90 -2.3
1,429 - 0.3
1,453 + -0.3
1,459 + 0.8
1,459 + 0.1
1,460 - -0.9
1,461 + -1.3
1,462 + 0.8
1,467 + 0.1
1,470 - 0.1
1,474 - -0.5
1,485 + 0.4
1,520 + -0.6
1,523 + 0.5
1,531 - 1.2
1,537 + -0.0
1,541 + 1.6
1,562 + 1.3
1,567 + -0.1
1,572 + -0.3
1,582 - -0.0
1,584 - 0.9
1,589 + -0.9
1,596 - -0.4
1,601 - -0.3
1,602 + -0.5
1,605 + 1.8
1,609 + 0.9
1,616 + -0.2
1,636 + 1.5
1,654 + 0.4
1,656 - 0.7
1,666 + -0.0
1,675 - 1.5
1,682 - -0.3
1,697 - 0.5
1,709 + -1.1
1,709 - 0.8
1,711 + 0.2
1,718 - 1.5
1,719 + 0.1
1,722 - -0.2
1,723 + 0.1
1,725 - -0.5
1,725 - -0.2
1,727 + -1.1
1,730 + -0.3
1,731 + 0.4
1,732 + 2.2
1,732 + -0.3
1,734 + -0.5
1,734 + 0.2
1,734 + -0.3
1,739 - 0.6
1,740 + 2.4
1,744 - -0.4
1,747 + -0.0
1,749 + 0.3
1,759 + 0.3
1,759 + 0.5
1,759 + 1.5
1,761 + 0.9
1,763 + -0.5
1,765 + -0.4
1,767 + 2.7
1,769 + 0.7
1,772 + -0.4
1,772 + 1.2
1,774 + 0.5
1,774 + -0.6
1,775 + 0.4
1,776 - 1.5
1,776 + 1.3
1,777 + 1.3
1,778 + 1.4
1,778 - 0.2
1,781 - 1.5
1,783 - 0.8
1,783 - 1.3
1,783 - 0.7
1,783 - 1.4
1,784 + 0.1
1,789 + 2.7
1,789 - 0.3
1,791 + -0.3
1,792 + -0.3
1,793 + 1.9
1,795 + -0.2
1,796 + -0.3
1,796 - 0.8
1,798 + 0.7
1,800 + -0.1
1,801 + -0.1
1,805 + 0.0
1,805 + 1.1
1,807 + 0.7
1,813 - 0.4
1,814 + 0.3
1,814 + 1.1
1,818 - 0.9
1,851 - 0.8
1,874 + 0.3
1,881 - -0.1
1,885 - 0.4
1,891 - -0.8
1,896 - 1.5
1,912 + 0.9
1,912 + 1.1
1,914 - 0.3
1,916 - -0.8
1,917 - 1.6
1,919 + -0.4
1,922 - 2.4
1,923 - 1.4
1,934 - 0.7
1,935 + 0.1
1,938 - 0.5
1,938 - 0.3
1,940 - 1.9
1,941 + 0.5
1,941 + 0.2
1,942 + -0.0
1,943 - -0.9
1,944 + 0.0
1,944 - 0.3
1,945 - 1.6
1,945 + 0.4
1,946 - 0.4
1,947 + 1.0
1,960 - 0.4
1,968 + 1.0
1,980 + 2.6
2,015 + -0.0
2,067 - 1.9
2,081 - 1.0
2,091 + 1.6
2,220 + -0.1
2,229 - 1.9
2,235 - 0.4
2,237 - 1.2
2,242 + -0.4
2,242 - 0.6
2,245 - 2.8
2,248 - 0.4
2,251 + 2.0
2,254 - 0.1
2,261 + 0.2
2,262 - 0.1
2,266 + 2.1
2,268 + 0.3
2,400 + 11538 mRNA_3170 0.21 -0.3
2,401 - 11538 mRNA_3170 0.21 1.3
2,404 + 11538 mRNA_3170 0.22 -0.3
2,414 + 11538 mRNA_3170 0.23 2.3
2,420 - 11538 mRNA_3170 0.23 2.0
2,439 + 11538 mRNA_3170 0.25 1.1
2,446 + 11538 mRNA_3170 0.26 2.8
2,470 - 11538 mRNA_3170 0.28 1.5
2,516 - 11538 mRNA_3170 0.32 -0.8