Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3154

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3153: 11521 - BLAST serine proline rich protein [Moniliophthora rorer..., at 439382 to 440661 11521 mRNA_3154: 11522 - K14831 MAK16 protein MAK16, at 440957 to 442475 11522

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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440,096 + 11521 mRNA_3153 0.56 0.2
440,332 - 11521 mRNA_3153 0.74 -0.4
440,340 + 11521 mRNA_3153 0.75 -0.5
440,495 - 11521 mRNA_3153 0.87 -1.3
440,508 + 11521 mRNA_3153 0.88 -0.3
440,639 - 0.4
440,692 + -1.1
440,928 - -0.1
440,945 - 1.3
440,973 - 0.3
441,230 - 11522 mRNA_3154 0.18 -2.7
441,364 + 11522 mRNA_3154 0.27 -1.1
441,385 + 11522 mRNA_3154 0.28 1.0
441,487 - 11522 mRNA_3154 0.35 1.9
441,546 - 11522 mRNA_3154 0.39 0.1
441,926 - 11522 mRNA_3154 0.64 3.3
441,980 + 11522 mRNA_3154 0.67 1.1
442,193 - 11522 mRNA_3154 0.81 0.2
442,202 + 11522 mRNA_3154 0.82 1.4
442,229 + 11522 mRNA_3154 0.84 0.5
442,370 - 1.1
442,376 - 0.6
442,521 - 0.7
442,527 + -0.8
442,528 + -1.9
442,543 + -1.0
442,567 + 1.3
442,665 - 1.1
442,665 - 1.0
442,666 + 2.2
442,667 + -0.5
442,667 + 0.6
442,670 + 0.6
442,671 - 2.5
442,674 - -0.4
442,676 - -0.1
442,681 + 0.4
442,689 - 0.8
442,692 - -0.1
442,693 + 0.1
442,695 + 0.3
442,711 + 1.0
442,729 + 0.9
442,807 + 1.3
442,808 + 2.5
442,843 - 0.8
442,850 - 0.2
442,919 - -0.0
442,963 + -1.0
442,970 + -0.2
442,984 - -0.7
442,984 - -0.2
442,995 - 0.6
442,997 - 0.1
442,997 - -0.8
443,002 + 0.6
443,003 - 0.7
443,011 - 2.2
443,015 + 0.3
443,022 + 0.4
443,026 - -0.4
443,030 + -0.1
443,033 - 0.6
443,049 + -0.8
443,051 - -0.1
443,052 - -0.4
443,052 - -1.2
443,054 - 1.3
443,055 + -1.0
443,058 - 1.7
443,058 + -0.5
443,058 + 0.5
443,062 + 0.2
443,064 + -1.3
443,069 - 1.2
443,069 - -0.4
443,073 - 3.0
443,073 - -0.7
443,078 - 0.2
443,083 - 0.0
443,087 - 0.3
443,090 + 1.4
443,090 + 0.4
443,092 - -0.2
443,096 - -1.1
443,096 - 0.2
443,097 + 1.6
443,099 + -0.7
443,102 - 0.1
443,105 + -0.0
443,106 - -0.4
443,108 - -0.6
443,109 + 1.3
443,109 + 1.0
443,112 - 0.2
443,112 - 1.0
443,113 - -0.1
443,114 - 0.3
443,115 - -1.6
443,118 - 0.1
443,120 - 1.4
443,121 + -0.7
443,123 - 1.3
443,125 - 0.7
443,126 - -0.1
443,128 - 1.6
443,129 - 1.3
443,130 + 0.2
443,131 + 0.1
443,135 + -0.3
443,135 - 0.3
443,135 + 1.0
443,136 + -0.3
443,136 - -0.5
443,136 + 0.3
443,138 + 0.3
443,138 - 0.3
443,139 + 0.0
443,143 - -1.1
443,143 + 1.3
443,145 - 0.3
443,150 + 0.1
443,166 + -0.3
443,195 - 1.6
443,200 + 0.9
443,201 + 0.2
443,203 - -1.1
443,206 - 0.8
443,211 - -0.1
443,211 - -0.5
443,211 + 1.0
443,214 + 0.1
443,215 - 0.4
443,220 - -0.4
443,222 - -1.8
443,222 + 0.5
443,222 - -0.3
443,222 + -0.0
443,223 - -2.4
443,228 - 0.0
443,233 - -1.5
443,236 - -0.2
443,236 - -0.5
443,238 + -0.4
443,238 - -1.1
443,240 + 1.9
443,241 + 0.0
443,242 + 0.1
443,245 - 0.2
443,245 - 0.1
443,246 + -0.0
443,247 + 0.4
443,248 + -0.4
443,249 + -1.6
443,251 + 0.0
443,253 + -0.1
443,257 + -0.2
443,257 + 0.7
443,257 + 1.7
443,262 - 0.2
443,264 - -0.8
443,264 + 0.9
443,266 - 0.4
443,268 + -0.3
443,268 + 0.3
443,273 + 0.0
443,282 - 2.5
443,283 + -0.5
443,289 + -0.0
443,297 + 0.8
443,300 - -0.1
443,300 - -0.9
443,367 - 0.3
443,379 + -0.2
443,397 + -0.7
443,408 + -0.0
443,409 + -0.0
443,411 - -0.8
443,414 + -0.0
443,415 - -1.0
443,416 + 0.3
443,416 - -0.9
443,418 + -0.4
443,420 - -0.2
443,420 - 0.4
443,424 - 1.9
443,428 - -0.3
443,430 - -0.4
443,430 - 0.5
443,430 + -0.3
443,436 + 0.2
443,436 + 0.4
443,439 + -0.4
443,470 + -1.0