Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3150

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3149: 11517 - K17917 SNX1_2 sorting nexin-1/2, at 430887 to 434419 11517 mRNA_3150: 11518 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 435030 to 436321 11518 mRNA_3151: 11519 - Hypothetical Protein, at 436481 to 438109 11519

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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434,112 + 1.7
434,119 - -0.3
434,238 - 1.7
434,255 - 0.6
434,278 - -0.2
434,296 - -0.6
434,379 + 2.8
434,393 + 0.8
434,395 + 1.1
434,395 - -0.3
434,399 - -1.7
434,400 - 0.8
434,514 - -0.0
434,518 + 1.0
434,524 + 0.1
434,531 - 0.0
434,541 + 0.9
434,544 + 1.0
434,544 - -1.0
434,644 - -1.5
434,665 + 0.0
434,671 + 0.2
434,672 - 1.6
434,675 - 1.8
434,677 - 2.8
434,689 - 0.8
434,689 + 0.9
434,691 + 1.0
434,694 + 0.1
434,699 + 3.7
434,720 - 0.1
434,757 - 0.6
434,817 - -0.1
434,819 + 0.1
434,836 + 0.0
434,865 + 1.5
434,978 + -0.9
434,983 - 1.1
434,992 + -1.2
434,997 - -0.6
435,105 - 0.7
435,109 - -0.4
435,123 - 0.1
435,407 + 11518 mRNA_3150 0.29 -0.7
435,437 + 11518 mRNA_3150 0.32 1.2
435,442 + 11518 mRNA_3150 0.32 0.7
435,469 + 11518 mRNA_3150 0.34 0.1
435,484 + 11518 mRNA_3150 0.35 0.9
435,485 + 11518 mRNA_3150 0.35 -1.0
435,564 - 11518 mRNA_3150 0.41 0.9
435,571 + 11518 mRNA_3150 0.42 0.2
435,684 - 11518 mRNA_3150 0.51 0.1
435,702 + 11518 mRNA_3150 0.52 0.0
435,718 - 11518 mRNA_3150 0.53 -0.4
435,843 - 11518 mRNA_3150 0.63 -0.1
435,865 + 11518 mRNA_3150 0.65 1.7
435,979 - 11518 mRNA_3150 0.73 -0.4
436,001 - 11518 mRNA_3150 0.75 0.2
436,102 - 11518 mRNA_3150 0.83 0.5
436,241 + 0.6
436,445 + -0.2
436,643 + 0.9
436,712 - 11519 mRNA_3151 0.14 -0.2
436,734 - 11519 mRNA_3151 0.16 0.1
436,799 + 11519 mRNA_3151 0.20 1.1
436,895 + 11519 mRNA_3151 0.25 2.5
436,901 + 11519 mRNA_3151 0.26 0.7
437,009 - 11519 mRNA_3151 0.32 2.3
437,041 + 11519 mRNA_3151 0.34 0.4
437,214 - 11519 mRNA_3151 0.45 -0.1
437,264 + 11519 mRNA_3151 0.48 0.7
437,296 + 11519 mRNA_3151 0.50 0.5
437,300 + 11519 mRNA_3151 0.50 0.1
437,300 - 11519 mRNA_3151 0.50 0.3
437,303 - 11519 mRNA_3151 0.50 0.2
437,315 - 11519 mRNA_3151 0.51 0.9