Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3140

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3139: 11507 - HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729, at 410271 to 410837 11507 mRNA_3140: 11508 - BLAST peptide release factor [Melanopsichium pennsylvanicum 4], at 411347 to 412227 11508 mRNA_3141: 11509 - HMMPfam-Proline-rich nuclear receptor coactivator-PF15365, at 412291 to 413595 11509

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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410,423 - 11507 mRNA_3139 0.27 -0.1
410,460 + 11507 mRNA_3139 0.33 -0.0
410,477 - 11507 mRNA_3139 0.36 -0.0
410,560 + 11507 mRNA_3139 0.51 0.2
410,576 + 11507 mRNA_3139 0.54 -0.5
410,576 + 11507 mRNA_3139 0.54 0.5
410,587 + 11507 mRNA_3139 0.56 -1.1
410,593 + 11507 mRNA_3139 0.57 0.1
410,644 - 11507 mRNA_3139 0.66 0.7
410,720 + 11507 mRNA_3139 0.79 0.1
410,758 - 11507 mRNA_3139 0.86 1.3
410,795 + 0.5
410,798 - -1.4
410,855 + 0.0
410,860 - 0.0
410,866 - -0.1
410,927 + -0.3
410,955 - -0.6
410,963 - -0.5
410,978 - -0.3
410,998 + 0.1
411,007 + 0.4
411,012 - 1.9
411,019 + -0.1
411,021 + 0.1
411,021 + -0.4
411,032 - 0.2
411,045 - -1.1
411,076 + 0.8
411,102 + 0.0
411,118 - 0.6
411,122 - 0.1
411,130 - -0.7
411,141 + -0.6
411,147 + 0.4
411,147 + 0.4
411,155 - 1.0
411,156 - -0.3
411,157 + 0.4
411,163 - -0.3
411,165 - 1.9
411,166 + 0.5
411,168 - -0.0
411,175 + -0.9
411,178 - -0.2
411,180 - 0.4
411,183 + 2.5
411,192 + -1.1
411,193 - 0.3
411,194 - -0.2
411,211 - -0.1
411,218 - -0.9
411,218 - 0.5
411,220 + -0.0
411,231 + 1.4
411,232 - 1.0
411,236 + -0.1
411,237 + -0.0
411,238 + -0.1
411,261 + -0.1
411,262 + 0.6
411,274 + -0.8
411,275 + 0.5
411,276 + 1.3
411,293 - -1.7
411,293 + -0.5
411,295 + 2.0
411,301 - 1.4
411,303 + 0.3
411,310 + 1.4
411,317 - 0.2
411,333 + 0.1
411,381 - 0.9
411,394 + 1.5
411,422 - 1.4
411,435 - 11508 mRNA_3140 0.10 -0.6
411,435 - 11508 mRNA_3140 0.10 -0.6
411,436 + 11508 mRNA_3140 0.10 3.0
411,437 + 11508 mRNA_3140 0.10 -0.2
411,449 - 11508 mRNA_3140 0.12 1.2
411,454 + 11508 mRNA_3140 0.12 -0.3
411,588 - 11508 mRNA_3140 0.27 -0.3
411,595 - 11508 mRNA_3140 0.28 -1.0
411,745 + 11508 mRNA_3140 0.45 0.6
411,770 - 11508 mRNA_3140 0.48 -0.5
411,815 + 11508 mRNA_3140 0.53 2.2
411,869 + 11508 mRNA_3140 0.59 0.9
411,872 + 11508 mRNA_3140 0.60 -0.5
411,881 + 11508 mRNA_3140 0.61 -0.1
411,883 - 11508 mRNA_3140 0.61 -0.7
411,883 + 11508 mRNA_3140 0.61 1.0
411,900 + 11508 mRNA_3140 0.63 0.0
411,904 - 11508 mRNA_3140 0.63 -0.1
412,004 + 11508 mRNA_3140 0.75 -0.1
412,011 - 11508 mRNA_3140 0.75 1.2
412,022 - 11508 mRNA_3140 0.77 0.1
412,036 + 11508 mRNA_3140 0.78 0.2
412,068 + 11508 mRNA_3140 0.82 -0.0
412,138 - 11508 mRNA_3140 0.90 1.0
412,163 - 0.3
412,163 - -0.0
412,163 - 1.2
412,177 + 1.6
412,177 + 0.9
412,183 - 0.1
412,186 - -0.0
412,305 - -0.3
412,315 - 0.3
412,317 - 0.6
412,323 + -0.2
412,351 - 0.1
412,352 + -0.8
412,371 + -0.1
412,452 + 11509 mRNA_3141 0.12 2.6
412,454 - 11509 mRNA_3141 0.12 0.3
412,494 - 11509 mRNA_3141 0.16 0.4
412,611 + 11509 mRNA_3141 0.25 -0.2
412,611 - 11509 mRNA_3141 0.25 0.3
412,611 + 11509 mRNA_3141 0.25 -0.4
412,636 - 11509 mRNA_3141 0.26 1.3
412,638 + 11509 mRNA_3141 0.27 0.1
412,640 - 11509 mRNA_3141 0.27 0.8
412,641 - 11509 mRNA_3141 0.27 0.2
412,641 + 11509 mRNA_3141 0.27 0.7
412,650 - 11509 mRNA_3141 0.28 0.4
412,770 + 11509 mRNA_3141 0.37 1.0
412,777 - 11509 mRNA_3141 0.37 -0.2
412,782 - 11509 mRNA_3141 0.38 -0.4
412,787 + 11509 mRNA_3141 0.38 0.4
412,791 + 11509 mRNA_3141 0.38 -0.2
412,793 - 11509 mRNA_3141 0.38 1.9
412,797 + 11509 mRNA_3141 0.39 1.3
412,802 - 11509 mRNA_3141 0.39 1.0
412,803 - 11509 mRNA_3141 0.39 0.2
412,816 + 11509 mRNA_3141 0.40 -0.5
412,817 + 11509 mRNA_3141 0.40 0.8
412,953 + 11509 mRNA_3141 0.51 -1.0
412,957 - 11509 mRNA_3141 0.51 -0.1
413,085 + 11509 mRNA_3141 0.61 -1.3