Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3130

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3130: 11498 - KOG2109 WD40 repeat protein, at 387441 to 391334 11498 mRNA_3131: 11499 - KOG1230 Protein containing repeated kelch motifs, at 391641 to 394728 11499

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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386,534 + -1.5
386,545 - -0.3
386,549 - -0.4
386,566 - 0.3
386,713 - 0.0
386,731 + 0.3
386,845 - 0.5
386,855 - -0.3
387,131 + -0.3
387,132 - -1.8
387,132 - 0.1
387,145 + 1.3
387,148 + -1.0
387,152 - -0.4
387,154 + 0.7
387,154 + -0.1
387,159 + 0.0
387,161 + -2.2
387,168 + 0.5
387,173 + -0.3
387,292 - 1.5
387,300 + -0.1
387,307 + 1.4
387,308 - 0.1
387,312 - -0.4
387,313 + 0.8
387,332 + 0.3
387,333 + -0.2
387,464 - 0.1
387,465 - -1.0
387,472 + -0.2
387,489 + 0.4
387,515 + -0.7
387,607 + 0.9
387,608 - -0.8
387,617 - -0.3
387,633 + -0.7
387,894 - 11498 mRNA_3130 0.12 1.0
387,899 + 11498 mRNA_3130 0.12 -0.5
387,899 + 11498 mRNA_3130 0.12 -0.8
388,068 + 11498 mRNA_3130 0.16 -0.4
388,225 - 11498 mRNA_3130 0.20 -0.0
388,343 - 11498 mRNA_3130 0.23 -1.4
388,364 - 11498 mRNA_3130 0.24 -0.8
388,371 + 11498 mRNA_3130 0.24 0.2
388,444 - 11498 mRNA_3130 0.26 1.7
388,463 + 11498 mRNA_3130 0.26 -0.1
388,471 - 11498 mRNA_3130 0.26 0.7
388,752 + 11498 mRNA_3130 0.34 -1.2
388,914 + 11498 mRNA_3130 0.38 -0.6
389,076 - 11498 mRNA_3130 0.42 2.3
389,124 - 11498 mRNA_3130 0.43 0.0
389,222 - 11498 mRNA_3130 0.46 -0.2
389,392 + 11498 mRNA_3130 0.50 -2.2
389,397 - 11498 mRNA_3130 0.50 0.6
389,510 + 11498 mRNA_3130 0.53 0.7
389,779 - 11498 mRNA_3130 0.60 -0.0
389,834 + 11498 mRNA_3130 0.61 0.1
389,985 + 11498 mRNA_3130 0.65 1.2
390,138 + 11498 mRNA_3130 0.69 -0.3
390,270 - 11498 mRNA_3130 0.73 -0.7
390,376 + 11498 mRNA_3130 0.75 0.4
390,417 + 11498 mRNA_3130 0.76 -0.6
390,538 + 11498 mRNA_3130 0.80 0.3
390,549 - 11498 mRNA_3130 0.80 1.0
390,703 - 11498 mRNA_3130 0.84 -0.7
390,706 + 11498 mRNA_3130 0.84 1.2
390,719 + 11498 mRNA_3130 0.84 0.5
390,721 + 11498 mRNA_3130 0.84 0.9
390,854 - 11498 mRNA_3130 0.88 1.7
390,896 - 11498 mRNA_3130 0.89 1.7
391,116 - -0.2
391,132 + -0.3
391,152 - -0.2
391,305 + -0.1
391,309 + 0.1
391,424 - 0.6
391,585 + 0.5
391,588 + -0.1
391,622 - -1.0
392,104 - 11499 mRNA_3131 0.15 0.2
392,295 - 11499 mRNA_3131 0.21 0.3
392,303 + 11499 mRNA_3131 0.21 -1.7
392,319 - 11499 mRNA_3131 0.22 -0.5
392,331 - 11499 mRNA_3131 0.22 -0.9