Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3122

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3120: 11488 - BLAST Protein cps3 [Rhizoctonia solani], at 367437 to 369368 11488 mRNA_3121: 11489 - KOG1039 Predicted E3 ubiquitin ligase, at 369378 to 369678 11489 mRNA_3122: 11490 - K05290 PIGK phosphatidylinositol glycan, class K, at 370199 to 371731 11490 mRNA_3123: 11491 - HMMPfam-Ribosomal RNA adenine dimethylase-PF00398,SUPERFAMILY--SSF53335, at 371854 to 373401 11491

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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369,227 - 0.6
369,231 - 2.3
369,236 - -0.1
369,237 - -0.1
369,239 + -0.2
369,268 - 1.2
369,302 + 0.6
369,370 - 0.2
369,372 - 0.2
369,394 + 0.9
369,402 - 0.1
369,521 - 11489 mRNA_3121 0.48 -0.4
369,635 + 11489 mRNA_3121 0.85 2.0
369,665 - 0.2
369,705 + 0.0
369,706 - 0.6
369,710 + -0.0
369,828 - -0.6
369,834 - -0.5
369,968 - 0.4
369,972 - 0.4
369,980 + -1.1
369,994 - 1.5
370,120 - -1.3
370,127 + 0.6
370,128 - 0.4
370,140 - -0.2
370,144 - 2.9
370,145 + -1.4
370,145 + -1.1
370,156 - -0.3
370,159 + -0.0
370,281 - -0.2
370,287 - -0.9
370,336 + 1.7
370,392 - 11490 mRNA_3122 0.13 0.2
370,581 - 11490 mRNA_3122 0.25 0.6
370,708 - 11490 mRNA_3122 0.33 0.2
370,714 + 11490 mRNA_3122 0.34 -0.7
370,895 + 11490 mRNA_3122 0.45 -0.1
370,924 - 11490 mRNA_3122 0.47 1.2
371,004 - 11490 mRNA_3122 0.53 0.7
371,042 + 11490 mRNA_3122 0.55 0.6
371,044 + 11490 mRNA_3122 0.55 -1.1
371,170 - 11490 mRNA_3122 0.63 0.6
371,203 - 11490 mRNA_3122 0.65 -0.4
371,315 - 11490 mRNA_3122 0.73 -0.2
371,518 - 11490 mRNA_3122 0.86 0.2
371,629 - 0.8
371,640 + 1.0
371,640 + 0.1
371,774 + -0.0
371,774 - 0.8
371,775 - -0.5
371,776 - 0.7
371,785 + 0.0
371,786 - 1.0
371,795 + -0.6
371,803 + -0.4
371,804 + -0.4
371,806 + 2.5
371,814 - 0.3
371,817 + 0.8
371,917 + 0.6
371,931 + 1.5
371,934 + -2.0
371,947 + 0.3
371,953 - 0.9
371,954 - -0.1
371,957 + -0.5
372,078 - 11491 mRNA_3123 0.14 -0.0
372,079 - 11491 mRNA_3123 0.15 1.7
372,080 + 11491 mRNA_3123 0.15 0.5
372,081 - 11491 mRNA_3123 0.15 -1.3
372,089 - 11491 mRNA_3123 0.15 -0.3
372,105 - 11491 mRNA_3123 0.16 1.1
372,116 + 11491 mRNA_3123 0.17 0.3
372,222 + 11491 mRNA_3123 0.24 1.1
372,244 + 11491 mRNA_3123 0.25 0.2
372,247 + 11491 mRNA_3123 0.25 -0.2
372,513 - 11491 mRNA_3123 0.43 0.1
372,516 + 11491 mRNA_3123 0.43 0.2
372,522 + 11491 mRNA_3123 0.43 0.5
372,538 + 11491 mRNA_3123 0.44 1.5