Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3109

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3108: 11476 - KOG2203 GTP-binding protein, at 340842 to 344399 11476 mRNA_3109: 11477 - K13172 SRRM2, SRM300 serine/arginine repetitive matrix protein 2, at 344614 to 345945 11477 mRNA_3110: 11478 - K14558 PWP2, UTP1 periodic tryptophan protein 2, at 346099 to 349205 11478

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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343,695 + 11476 mRNA_3108 0.80 -0.2
343,859 - 11476 mRNA_3108 0.85 -0.8
344,002 - 11476 mRNA_3108 0.89 -0.1
344,131 - 1.5
344,132 + -0.2
344,134 + -0.2
344,135 - -0.0
344,142 - 0.6
344,155 - -1.1
344,269 + -0.8
344,277 - -0.1
344,283 + -1.9
344,292 - 0.1
344,292 - -0.0
344,298 - 1.5
344,299 + 0.8
344,302 + -0.2
344,306 + 1.3
344,437 - -0.5
344,438 - -0.5
344,439 - -0.6
344,451 - 0.5
344,451 + -1.1
344,457 + 0.2
344,457 - 1.0
344,458 + 0.1
344,549 - 1.4
344,575 - -0.5
344,575 + -0.5
344,582 - 1.5
344,584 - -0.1
344,586 - -1.5
344,588 - 0.4
344,589 + 0.3
344,595 - -0.5
344,596 + 0.3
344,603 + 0.1
344,614 + 0.0
344,733 - 0.4
344,741 + 0.3
344,746 - 1.0
344,749 + 11477 mRNA_3109 0.10 -0.3
344,864 - 11477 mRNA_3109 0.19 0.9
344,872 - 11477 mRNA_3109 0.19 2.4
344,875 + 11477 mRNA_3109 0.20 0.9
344,901 + 11477 mRNA_3109 0.22 2.8
345,007 - 11477 mRNA_3109 0.30 -0.1
345,018 + 11477 mRNA_3109 0.30 1.0
345,042 + 11477 mRNA_3109 0.32 1.5
345,060 - 11477 mRNA_3109 0.33 -0.9
345,141 - 11477 mRNA_3109 0.40 -0.9
345,142 + 11477 mRNA_3109 0.40 2.2
345,165 + 11477 mRNA_3109 0.41 0.6
345,306 - 11477 mRNA_3109 0.52 0.9
345,430 - 11477 mRNA_3109 0.61 2.9
345,438 + 11477 mRNA_3109 0.62 2.3
345,473 - 11477 mRNA_3109 0.64 1.2
345,581 + 11477 mRNA_3109 0.73 2.1
345,621 + 11477 mRNA_3109 0.76 0.5
345,914 - 1.4
346,065 + 0.2
346,186 + 0.5
346,189 - -0.3
346,432 + 11478 mRNA_3110 0.11 1.7
346,452 - 11478 mRNA_3110 0.11 -0.7
346,597 + 11478 mRNA_3110 0.16 0.5
346,618 - 11478 mRNA_3110 0.17 -0.4
346,666 - 11478 mRNA_3110 0.18 -0.9
346,700 - 11478 mRNA_3110 0.19 -0.4
346,757 + 11478 mRNA_3110 0.21 -0.0
346,772 + 11478 mRNA_3110 0.22 -0.4
346,798 - 11478 mRNA_3110 0.22 1.0