Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3108

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3107: 11475 - K11412 SIRT2, SIR2L2 NAD-dependent deacetylase sirtuin 2, at 339155 to 340730 11475 mRNA_3108: 11476 - KOG2203 GTP-binding protein, at 340842 to 344399 11476 mRNA_3109: 11477 - K13172 SRRM2, SRM300 serine/arginine repetitive matrix protein 2, at 344614 to 345945 11477

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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339,885 - 11475 mRNA_3107 0.46 -0.5
339,899 - 11475 mRNA_3107 0.47 -0.2
340,066 - 11475 mRNA_3107 0.58 1.2
340,193 - 11475 mRNA_3107 0.66 -0.0
340,195 - 11475 mRNA_3107 0.66 0.2
340,288 - 11475 mRNA_3107 0.72 -0.5
340,635 + 0.2
340,676 - 0.7
340,790 - -0.8
340,907 - -0.5
341,035 - 1.3
341,059 - 2.6
341,067 + 1.6
341,086 - 0.2
341,250 + 11476 mRNA_3108 0.11 2.4
341,659 + 11476 mRNA_3108 0.23 1.8
341,682 + 11476 mRNA_3108 0.24 1.4
341,785 + 11476 mRNA_3108 0.27 1.2
341,810 - 11476 mRNA_3108 0.27 0.8
342,229 + 11476 mRNA_3108 0.39 -0.7
342,398 + 11476 mRNA_3108 0.44 0.1
342,416 - 11476 mRNA_3108 0.44 0.5
342,490 - 11476 mRNA_3108 0.46 0.4
342,511 + 11476 mRNA_3108 0.47 1.0
342,529 + 11476 mRNA_3108 0.47 0.6
342,802 - 11476 mRNA_3108 0.55 1.5
342,827 + 11476 mRNA_3108 0.56 0.1
342,975 + 11476 mRNA_3108 0.60 1.2
342,985 - 11476 mRNA_3108 0.60 -0.5
343,106 - 11476 mRNA_3108 0.64 -0.4
343,277 + 11476 mRNA_3108 0.68 0.9
343,306 + 11476 mRNA_3108 0.69 1.6
343,565 + 11476 mRNA_3108 0.77 0.3
343,597 + 11476 mRNA_3108 0.77 0.6
343,695 + 11476 mRNA_3108 0.80 -0.2
343,859 - 11476 mRNA_3108 0.85 -0.8
344,002 - 11476 mRNA_3108 0.89 -0.1
344,131 - 1.5
344,132 + -0.2
344,134 + -0.2
344,135 - -0.0
344,142 - 0.6
344,155 - -1.1
344,269 + -0.8
344,277 - -0.1
344,283 + -1.9
344,292 - 0.1
344,292 - -0.0
344,298 - 1.5
344,299 + 0.8
344,302 + -0.2
344,306 + 1.3
344,437 - -0.5
344,438 - -0.5
344,439 - -0.6
344,451 - 0.5
344,451 + -1.1
344,457 + 0.2
344,457 - 1.0
344,458 + 0.1
344,549 - 1.4
344,575 - -0.5
344,575 + -0.5
344,582 - 1.5
344,584 - -0.1
344,586 - -1.5
344,588 - 0.4
344,589 + 0.3
344,595 - -0.5
344,596 + 0.3
344,603 + 0.1
344,614 + 0.0
344,733 - 0.4
344,741 + 0.3
344,746 - 1.0
344,749 + 11477 mRNA_3109 0.10 -0.3
344,864 - 11477 mRNA_3109 0.19 0.9
344,872 - 11477 mRNA_3109 0.19 2.4
344,875 + 11477 mRNA_3109 0.20 0.9
344,901 + 11477 mRNA_3109 0.22 2.8
345,007 - 11477 mRNA_3109 0.30 -0.1
345,018 + 11477 mRNA_3109 0.30 1.0
345,042 + 11477 mRNA_3109 0.32 1.5
345,060 - 11477 mRNA_3109 0.33 -0.9
345,141 - 11477 mRNA_3109 0.40 -0.9
345,142 + 11477 mRNA_3109 0.40 2.2
345,165 + 11477 mRNA_3109 0.41 0.6
345,306 - 11477 mRNA_3109 0.52 0.9