Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3096

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3095: 11463 - K01739 metB cystathionine gamma-synthase, at 307460 to 310020 11463 mRNA_3096: 11464 - K17262 TBCB, CKAP1, ALF1 tubulin-folding cofactor B, at 310272 to 311367 11464 mRNA_3097: 11465 - K00591 COQ3 polyprenyldihydroxybenzoate methyltransferase / 3-demethylubiquinol 3-O-methyltransferase, at 311599 to 312739 11465

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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309,341 - 11463 mRNA_3095 0.73 0.4
309,354 - 11463 mRNA_3095 0.74 -0.4
309,460 - 11463 mRNA_3095 0.78 -0.7
309,505 + 11463 mRNA_3095 0.80 -1.4
309,515 - 11463 mRNA_3095 0.80 0.7
309,591 - 11463 mRNA_3095 0.83 -1.2
309,647 + 11463 mRNA_3095 0.85 1.3
309,662 - 11463 mRNA_3095 0.86 0.1
309,768 + -2.3
309,777 - -1.4
309,782 - -0.6
309,796 - 2.9
309,800 - 1.8
309,936 + -2.3
309,968 + -0.7
309,970 + 0.7
309,984 + 2.1
310,058 + -1.3
310,075 + 0.8
310,081 + 1.4
310,084 - 0.8
310,087 + -0.3
310,096 - -1.2
310,097 + 1.9
310,105 + -0.7
310,107 + 0.8
310,108 - 0.1
310,113 - 0.5
310,122 - 0.3
310,123 + 0.2
310,155 - -0.4
310,249 - -0.3
310,255 + 1.9
310,264 - 0.4
310,272 - 0.4
310,276 + 2.1
310,293 + 1.1
310,375 + 2.3
310,387 + 11464 mRNA_3096 0.10 -0.2
310,397 - 11464 mRNA_3096 0.11 -1.4
310,397 - 11464 mRNA_3096 0.11 -0.8
310,399 - 11464 mRNA_3096 0.12 -0.2
310,403 + 11464 mRNA_3096 0.12 -0.7
310,407 + 11464 mRNA_3096 0.12 -0.0
310,415 + 11464 mRNA_3096 0.13 0.8
310,423 + 11464 mRNA_3096 0.14 2.0
310,509 - 11464 mRNA_3096 0.22 0.4
310,520 + 11464 mRNA_3096 0.23 0.3
310,531 - 11464 mRNA_3096 0.24 -0.1
310,550 - 11464 mRNA_3096 0.25 -0.5
310,563 + 11464 mRNA_3096 0.27 1.7
310,566 - 11464 mRNA_3096 0.27 -0.7
310,571 - 11464 mRNA_3096 0.27 0.9
310,692 + 11464 mRNA_3096 0.38 -0.2
310,693 + 11464 mRNA_3096 0.38 -0.5
310,851 + 11464 mRNA_3096 0.53 0.1
310,993 - 11464 mRNA_3096 0.66 -1.0
311,068 - 11464 mRNA_3096 0.73 1.4
311,120 + 11464 mRNA_3096 0.77 0.2
311,310 + -2.3
311,321 - 1.1
311,400 - 0.1
311,405 - -0.1
311,545 - 3.0
311,558 - -0.1
311,564 - -0.3
311,564 - 0.5
311,565 - -0.1
311,568 - 0.0
311,577 + -0.4
311,583 + -0.5
311,589 + -1.7
311,592 + 0.1
311,670 - 0.7
311,704 + -0.2
311,717 + 11465 mRNA_3097 0.10 -0.5
311,725 + 11465 mRNA_3097 0.11 0.0
311,758 + 11465 mRNA_3097 0.14 0.9
311,850 - 11465 mRNA_3097 0.22 0.0
311,869 - 11465 mRNA_3097 0.24 -0.2
312,026 - 11465 mRNA_3097 0.37 0.8
312,032 + 11465 mRNA_3097 0.38 -0.3
312,136 + 11465 mRNA_3097 0.47 -1.0
312,233 + 11465 mRNA_3097 0.56 1.0