Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3086

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3085: 11453 - K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit, at 284368 to 286217 11453 mRNA_3086: 11454 - K03136 TFIIE1, GTF2E1, TFA1, tfe transcription initiation factor TFIIE subunit alpha, at 286949 to 288955 11454 mRNA_3087: 11455 - HMMPfam-haloacid dehalogenase-like hydrolase-PF12710,SUPERFAMILY--SSF56784,TIGRFAM-HAD-SF-IB HAD phosphoserine phosphatase-like hydrolase, family IB-TIGR01488,TIGRFAM-DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase-TIGR01489, at 289552 to 290619 11455

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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286,039 + 1.5
286,151 + 0.7
286,335 + 0.1
286,455 - 0.1
286,462 - 0.3
286,608 - 0.1
286,614 + -0.7
286,614 - 0.3
286,616 - -0.4
286,754 - 0.3
287,058 - -0.1
287,365 + 11454 mRNA_3086 0.21 2.0
287,373 - 11454 mRNA_3086 0.21 0.5
287,645 + 11454 mRNA_3086 0.35 1.5
287,674 - 11454 mRNA_3086 0.36 0.8
288,092 + 11454 mRNA_3086 0.57 -0.4
288,094 + 11454 mRNA_3086 0.57 1.4
288,227 + 11454 mRNA_3086 0.64 0.4
288,381 - 11454 mRNA_3086 0.71 -0.3
288,602 - 11454 mRNA_3086 0.82 -1.8
288,603 + 11454 mRNA_3086 0.82 -2.0
288,681 + 11454 mRNA_3086 0.86 -0.8
288,693 + 11454 mRNA_3086 0.87 -1.1
288,948 - -0.1
288,957 + -0.4
289,069 - 2.1
289,081 + -0.6
289,094 - 1.3
289,097 - 1.3
289,098 - -0.8
289,107 - -0.4
289,110 - -1.1
289,115 - 0.9
289,119 + -0.1
289,243 - -0.6
289,247 + 0.2
289,249 + 1.8
289,280 + 1.6
289,403 + 0.4
289,405 + 0.4
289,410 + 1.1
289,566 + 0.3
289,698 + 11455 mRNA_3087 0.14 0.4