Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3061

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3060: 11428 - K13115 CCDC130 coiled-coil domain-containing protein 130, at 219691 to 221317 11428 mRNA_3061: 11429 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 221802 to 224881 11429 mRNA_3062: 11430 - SUPERFAMILY--SSF49899, at 225232 to 227100 11430

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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221,253 + 0.8
221,380 - 1.4
221,387 + -0.7
221,397 + 0.2
221,489 - 0.5
221,818 + 0.1
221,962 + -1.7
222,113 + 11429 mRNA_3061 0.10 -0.5
222,222 - 11429 mRNA_3061 0.14 0.5
222,241 - 11429 mRNA_3061 0.14 -0.7
222,268 - 11429 mRNA_3061 0.15 1.3
222,529 + 11429 mRNA_3061 0.24 -0.4
222,653 - 11429 mRNA_3061 0.28 0.2
222,710 + 11429 mRNA_3061 0.29 0.5
222,940 - 11429 mRNA_3061 0.37 1.8
222,971 - 11429 mRNA_3061 0.38 -0.3
222,976 - 11429 mRNA_3061 0.38 1.5
223,276 - 11429 mRNA_3061 0.48 -0.3
223,302 - 11429 mRNA_3061 0.49 0.0
223,308 - 11429 mRNA_3061 0.49 1.0
223,384 - 11429 mRNA_3061 0.51 0.3
223,421 + 11429 mRNA_3061 0.53 0.5
223,463 - 11429 mRNA_3061 0.54 0.1
223,483 - 11429 mRNA_3061 0.55 0.2
223,556 + 11429 mRNA_3061 0.57 0.3
223,598 + 11429 mRNA_3061 0.58 0.9
223,604 + 11429 mRNA_3061 0.59 -0.2
223,660 - 11429 mRNA_3061 0.60 0.9
223,676 - 11429 mRNA_3061 0.61 0.1
223,700 + 11429 mRNA_3061 0.62 2.0
223,851 + 11429 mRNA_3061 0.67 -1.1
223,926 + 11429 mRNA_3061 0.69 0.3
224,006 + 11429 mRNA_3061 0.72 0.7
224,016 - 11429 mRNA_3061 0.72 0.0
224,130 - 11429 mRNA_3061 0.76 -0.1
224,567 - 11429 mRNA_3061 0.90 1.7
224,586 + 1.7
224,587 - -0.0
224,626 - 0.3
224,700 + -0.9
224,815 + 0.1
224,822 - 0.0
224,847 + -1.1
224,854 - 0.3
224,866 + 1.1
224,872 + -1.0
224,957 + 2.8
225,033 + 0.1
225,103 - 0.4
225,135 - 1.3
225,138 + 0.6
225,140 + 0.5
225,140 - -2.7
225,142 + 0.6
225,146 + -0.4
225,147 + 0.7
225,148 + -0.0
225,158 + 2.5
225,264 + -0.8
225,334 - 1.2
225,340 - 0.3
225,347 + 1.7
225,450 - 11430 mRNA_3062 0.12 -1.0
225,473 + 11430 mRNA_3062 0.13 0.3
225,555 + 11430 mRNA_3062 0.17 0.3
225,594 - 11430 mRNA_3062 0.19 1.6
225,610 - 11430 mRNA_3062 0.20 -0.8
225,610 + 11430 mRNA_3062 0.20 0.4
225,636 - 11430 mRNA_3062 0.22 -0.7
225,644 + 11430 mRNA_3062 0.22 -1.0
225,646 - 11430 mRNA_3062 0.22 -0.3
225,651 - 11430 mRNA_3062 0.22 0.8
225,705 + 11430 mRNA_3062 0.25 -1.4
225,706 - 11430 mRNA_3062 0.25 0.9
225,748 - 11430 mRNA_3062 0.28 0.7
225,761 - 11430 mRNA_3062 0.28 0.1
225,840 + 11430 mRNA_3062 0.33 2.4
225,867 + 11430 mRNA_3062 0.34 0.0
225,880 + 11430 mRNA_3062 0.35 -1.2