Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3055

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3054: 11422 - Hypothetical Protein, at 207270 to 207722 11422 mRNA_3055: 11423 - Hypothetical Protein, at 208583 to 210185 11423 mRNA_3056: 11424 - K11290 SET, TAF1, I2PP2A template-activating factor I, at 210409 to 211861 11424

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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207,643 - 11422 mRNA_3054 0.82 0.3
207,643 - 11422 mRNA_3054 0.82 0.3
207,818 + 1.2
207,925 + -0.2
207,955 - 0.3
208,071 - -0.8
208,092 - 1.1
208,096 + -0.6
208,099 - -1.0
208,100 - -0.6
208,101 + 0.5
208,103 + 0.9
208,108 - -0.5
208,108 + 0.2
208,108 + -0.5
208,112 - -0.6
208,118 + -0.3
208,123 - 2.7
208,124 + 0.1
208,155 - -2.0
208,223 + -0.1
208,228 - 1.1
208,229 + 1.9
208,239 - -1.1
208,248 + 1.4
208,253 + -1.4
208,259 - 0.7
208,392 - 2.0
208,397 - 0.8
208,400 - -0.5
208,414 + -0.6
208,420 + 1.3
208,523 + -0.3
208,561 - 1.6
208,653 + 0.1
208,681 + 1.5
208,689 + 0.3
208,806 - 11423 mRNA_3055 0.14 -0.5
208,834 - 11423 mRNA_3055 0.16 0.6
208,839 + 11423 mRNA_3055 0.16 -0.6
208,976 - 11423 mRNA_3055 0.25 -0.2
209,004 + 11423 mRNA_3055 0.26 1.6
209,114 + 11423 mRNA_3055 0.33 -0.1
209,404 - 11423 mRNA_3055 0.51 -0.5
209,458 - 11423 mRNA_3055 0.55 0.2
209,611 - 11423 mRNA_3055 0.64 0.8
209,839 + 11423 mRNA_3055 0.78 1.8
209,847 + 11423 mRNA_3055 0.79 0.2
210,000 - 11423 mRNA_3055 0.88 -0.1
210,001 + 11423 mRNA_3055 0.88 -0.6
210,018 + 11423 mRNA_3055 0.90 0.2
210,149 + 0.5
210,189 - 0.0
210,307 - 0.8
210,320 + 0.9
210,333 + 1.1
210,347 + 1.7
210,410 + -0.3
210,500 + 0.7
210,618 + 11424 mRNA_3056 0.14 0.4
210,739 + 11424 mRNA_3056 0.23 1.4
210,743 - 11424 mRNA_3056 0.23 0.1
210,774 - 11424 mRNA_3056 0.25 0.5
210,913 - 11424 mRNA_3056 0.35 1.3
210,984 + 11424 mRNA_3056 0.40 -0.0
211,027 + 11424 mRNA_3056 0.43 0.1
211,181 + 11424 mRNA_3056 0.53 -0.3