Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3048

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3047: 11415 - K03514 PAPD5_7, TRF4 non-canonical poly(A) RNA polymerase PAPD5/7, at 186454 to 188264 11415 mRNA_3048: 11416 - K03514 PAPD5_7, TRF4 non-canonical poly(A) RNA polymerase PAPD5/7, at 188658 to 190471 11416 mRNA_3049: 11417 - SUPERFAMILY--SSF50685, at 190757 to 193605 11417

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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188,007 + 11415 mRNA_3047 0.86 -0.3
188,028 + 11415 mRNA_3047 0.87 -1.0
188,031 - 11415 mRNA_3047 0.87 0.9
188,130 - 1.7
188,134 - -0.8
188,239 + -1.0
188,275 + 2.0
188,310 + 0.2
188,315 + 1.0
188,424 + 1.9
188,445 + 0.2
188,553 + 0.3
188,555 - -0.1
188,556 - 1.8
188,564 + -1.3
188,571 - 0.5
188,572 + 0.8
188,576 + 1.1
188,583 - -0.5
188,584 + 1.6
188,598 + 0.3
188,615 + -0.4
188,917 + 11416 mRNA_3048 0.14 -1.0
189,041 + 11416 mRNA_3048 0.21 0.7
189,058 - 11416 mRNA_3048 0.22 1.3
189,073 - 11416 mRNA_3048 0.23 0.8
189,075 + 11416 mRNA_3048 0.23 -0.3
189,109 + 11416 mRNA_3048 0.25 -0.6
189,111 - 11416 mRNA_3048 0.25 -0.4
189,122 + 11416 mRNA_3048 0.26 -1.3
189,125 + 11416 mRNA_3048 0.26 -0.4
189,127 - 11416 mRNA_3048 0.26 0.2
189,130 - 11416 mRNA_3048 0.26 0.6
189,139 - 11416 mRNA_3048 0.27 -1.1
189,145 - 11416 mRNA_3048 0.27 1.5
189,151 - 11416 mRNA_3048 0.27 -0.7
189,153 - 11416 mRNA_3048 0.27 -0.6
189,156 - 11416 mRNA_3048 0.27 0.3
189,157 + 11416 mRNA_3048 0.28 -1.1
189,157 + 11416 mRNA_3048 0.28 -0.4
189,158 - 11416 mRNA_3048 0.28 0.5
189,165 + 11416 mRNA_3048 0.28 0.5
189,166 + 11416 mRNA_3048 0.28 -0.1
189,173 + 11416 mRNA_3048 0.28 0.9
189,179 + 11416 mRNA_3048 0.29 2.1
189,202 + 11416 mRNA_3048 0.30 0.4
189,205 - 11416 mRNA_3048 0.30 0.6
189,206 - 11416 mRNA_3048 0.30 0.1
189,228 - 11416 mRNA_3048 0.31 -1.1
189,239 + 11416 mRNA_3048 0.32 0.3
189,246 + 11416 mRNA_3048 0.32 -0.1
189,281 - 11416 mRNA_3048 0.34 0.9
189,357 + 11416 mRNA_3048 0.39 1.4
189,360 + 11416 mRNA_3048 0.39 -0.2
189,381 + 11416 mRNA_3048 0.40 0.4
189,471 + 11416 mRNA_3048 0.45 1.8
189,474 + 11416 mRNA_3048 0.45 -1.1
189,590 - 11416 mRNA_3048 0.51 -0.4
189,618 - 11416 mRNA_3048 0.53 -0.0
189,898 - 11416 mRNA_3048 0.68 1.2
189,915 - 11416 mRNA_3048 0.69 -0.1
190,044 + 11416 mRNA_3048 0.76 0.3
190,076 + 11416 mRNA_3048 0.78 -0.8
190,096 - 11416 mRNA_3048 0.79 -0.4
190,388 - 0.1
190,390 - 0.0
190,585 - -0.3