Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2903

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2902: 11270 - K20367 ERGIC3, ERV46 endoplasmic reticulum-Golgi intermediate compartment protein 3, at 498164 to 500409 11270 mRNA_2903: 11271 - K06662 HRAD17, RAD24 cell cycle checkpoint protein, at 500559 to 503580 11271 mRNA_2904: 11272 - K03847 ALG12 alpha-1,6-mannosyltransferase, at 503747 to 505698 11272

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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499,634 - 11270 mRNA_2902 0.65 0.5
499,639 - 11270 mRNA_2902 0.66 -0.2
499,926 + 11270 mRNA_2902 0.78 1.1
500,182 + 11270 mRNA_2902 0.90 0.3
500,489 + 0.8
500,671 - 3.3
500,800 - 0.5
500,800 - 1.6
500,972 - 11271 mRNA_2903 0.14 -0.5
501,261 - 11271 mRNA_2903 0.23 1.5
502,321 + 11271 mRNA_2903 0.58 0.6
502,933 + 11271 mRNA_2903 0.79 0.6
503,382 - -1.6
503,444 + -1.7
503,702 - -0.3
503,702 + 0.1
504,007 - 11272 mRNA_2904 0.13 0.7
504,046 + 11272 mRNA_2904 0.15 -2.0
504,147 - 11272 mRNA_2904 0.20 -1.4
504,303 + 11272 mRNA_2904 0.28 -0.2
504,310 + 11272 mRNA_2904 0.29 -1.8