Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2901

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2900: 11268 - BLAST pyridoxamine-phosphate oxidase [Moniliophthora ro..., at 493675 to 494245 11268 mRNA_2901: 11269 - KOG1289 Amino acid transporters, at 494917 to 497480 11269 mRNA_2902: 11270 - K20367 ERGIC3, ERV46 endoplasmic reticulum-Golgi intermediate compartment protein 3, at 498164 to 500409 11270

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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494,113 + 11268 mRNA_2900 0.77 -1.0
494,367 + 0.3
494,433 + -0.2
494,489 + 1.4
494,513 + -0.7
494,547 + 0.3
494,604 - -0.5
494,604 - 0.6
494,635 - 0.1
494,646 + -0.1
494,651 + 0.9
494,655 + 0.8
494,655 - 1.2
494,656 + 0.2
494,684 + 0.7
494,684 - 0.1
494,687 - -0.6
494,692 - 0.1
494,699 - 0.2
494,700 - 0.5
494,701 + -1.1
494,717 + -1.4
494,722 - -0.0
494,816 + 0.5
494,818 - 0.4
494,837 - -0.5
494,851 - 0.4
494,861 + -0.6
494,874 + 0.2
494,927 - 0.7
494,988 - 0.1
495,011 - 1.2
495,016 - 0.9
495,052 + 0.8
495,129 - -0.5
495,162 - -1.4
495,276 + 11269 mRNA_2901 0.14 2.1
495,336 + 11269 mRNA_2901 0.16 -1.0
495,578 - 11269 mRNA_2901 0.26 -0.2
495,745 + 11269 mRNA_2901 0.32 -0.9
495,778 - 11269 mRNA_2901 0.34 1.0
496,459 - 11269 mRNA_2901 0.60 -1.2
496,502 - 11269 mRNA_2901 0.62 0.4
496,591 + 11269 mRNA_2901 0.65 -0.7
496,602 - 11269 mRNA_2901 0.66 0.7
496,713 - 11269 mRNA_2901 0.70 1.5
496,727 + 11269 mRNA_2901 0.71 -0.1
496,786 - 11269 mRNA_2901 0.73 0.6
497,060 + 11269 mRNA_2901 0.84 1.9
497,175 - 11269 mRNA_2901 0.88 0.4
497,180 + 11269 mRNA_2901 0.88 1.8
497,457 - 0.6
497,725 + 0.5
497,886 + -0.8
497,917 + 1.6
497,935 + 0.1
497,999 - 1.2
498,064 - 0.4
498,101 - -0.0
498,191 - 0.3
498,232 - -1.0