Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2885

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2884: 11252 - K10838 XPC xeroderma pigmentosum group C-complementing protein, at 447802 to 451973 11252 mRNA_2885: 11253 - K20246 EGT1 L-histidine Nalpha-methyltransferase / hercynylcysteine S-oxide synthase, at 452122 to 455835 11253 mRNA_2886: 11254 - Hypothetical Protein, at 456184 to 458722 11254

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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451,256 - 11252 mRNA_2884 0.83 -0.5
451,331 + 11252 mRNA_2884 0.85 -0.0
451,381 - 11252 mRNA_2884 0.86 -1.1
451,416 - 11252 mRNA_2884 0.87 -0.2
451,782 - 0.4
452,113 + -0.5
452,154 + -0.7
452,154 + 0.8
452,264 - 0.3
452,269 + 0.1
453,159 - 11253 mRNA_2885 0.28 0.2
453,281 - 11253 mRNA_2885 0.31 -1.3
453,304 - 11253 mRNA_2885 0.32 -0.3
453,678 - 11253 mRNA_2885 0.42 0.1
453,701 + 11253 mRNA_2885 0.43 2.7
453,744 - 11253 mRNA_2885 0.44 -0.5
453,762 + 11253 mRNA_2885 0.44 0.2
454,012 + 11253 mRNA_2885 0.51 -0.1
454,279 - 11253 mRNA_2885 0.58 0.5
454,321 - 11253 mRNA_2885 0.59 0.5
454,326 - 11253 mRNA_2885 0.59 -0.0
454,481 + 11253 mRNA_2885 0.64 0.1
454,645 + 11253 mRNA_2885 0.68 2.0
455,011 - 11253 mRNA_2885 0.78 0.0
455,017 - 11253 mRNA_2885 0.78 0.7
455,023 + 11253 mRNA_2885 0.78 -0.1
455,619 + 0.5
455,622 + 1.2
455,749 - -0.5
455,749 - -0.5
455,766 + 1.7
455,883 - -0.7
455,891 - 1.0
455,900 + 0.1
455,905 - -0.1
455,906 + 0.5
455,911 + -0.9
455,924 + 0.5
455,935 + -0.0
455,943 - 0.9
455,945 - 0.7
455,946 + 1.2
456,078 - -0.5
456,096 - 2.7
456,118 - 0.5
456,118 - 1.1
456,150 + 1.5
456,191 - 0.6
456,267 + 0.1
456,287 - 0.6
456,626 - 11254 mRNA_2886 0.17 1.2