Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2875

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2874: 11242 - K00555 TRMT1, trm1 tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase, at 417421 to 420167 11242 mRNA_2875: 11243 - HMMPfam-NMT1/THI5 like-PF09084,SUPERFAMILY--SSF53850, at 420566 to 422079 11243 mRNA_2876: 11244 - K18715 NUP159 nucleoporin NUP159, at 422380 to 429450 11244

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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419,578 - 11242 mRNA_2874 0.79 -0.6
420,151 - 0.4
420,155 + -0.1
420,397 - 0.2
420,604 + -0.3
420,729 - 11243 mRNA_2875 0.11 -0.3
420,794 - 11243 mRNA_2875 0.15 -1.5
420,794 - 11243 mRNA_2875 0.15 -0.1
420,835 + 11243 mRNA_2875 0.18 -0.7
420,883 - 11243 mRNA_2875 0.21 0.1
420,887 + 11243 mRNA_2875 0.21 0.2
421,298 - 11243 mRNA_2875 0.48 -1.2
421,326 - 11243 mRNA_2875 0.50 0.9
421,348 + 11243 mRNA_2875 0.52 0.8
421,423 - 11243 mRNA_2875 0.57 -0.3
421,590 - 11243 mRNA_2875 0.68 0.5
421,591 + 11243 mRNA_2875 0.68 1.0
421,870 - 11243 mRNA_2875 0.86 -0.3
421,899 + 11243 mRNA_2875 0.88 -1.3
421,899 + 11243 mRNA_2875 0.88 0.2
421,903 + 11243 mRNA_2875 0.88 1.7
422,210 - -1.6
422,315 - 0.7
422,343 - 0.1