Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2871

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2870: 11238 - SUPERFAMILY--SSF64182, at 409148 to 410896 11238 mRNA_2871: 11239 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 411310 to 412108 11239 mRNA_2872: 11240 - HMMPfam-Pyridine nucleotide-disulphide oxidoreductase-PF00070,PRINTS-FAD-dependent pyridine nucleotide reductase signature-PR00368,PRINTS-Pyridine nucleotide disulphide reductase class-I signature-PR00411,SUPERFAMILY--SSF51905, at 412487 to 414015 11240

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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410,368 - 11238 mRNA_2870 0.70 0.4
410,524 + 11238 mRNA_2870 0.79 -0.6
410,689 + 11238 mRNA_2870 0.88 0.0
410,840 + 0.1
410,920 + -0.2
410,963 + 0.2
410,968 - 0.6
410,971 + 0.5
410,972 - 0.0
410,974 - 2.5
410,974 - -0.3
410,975 + 0.6
411,007 - 1.7
411,007 - 1.3
411,008 - -1.1
411,012 + -1.1
411,015 + 1.5
411,023 + 0.3
411,024 + 1.3
411,025 + 0.4
411,034 + 0.0
411,034 + 0.6
411,035 + 1.5
411,035 + -0.2
411,036 + 0.5
411,039 + 1.0
411,070 + 1.0
411,083 + -0.3
411,083 - -0.2
411,084 + 1.0
411,085 - 1.2
411,087 + 0.1
411,100 - -0.2
411,105 + 0.2
411,108 + 0.0
411,111 + -0.1
411,114 + -0.0
411,117 + -1.6
411,228 + 1.2
411,231 + 0.3
411,234 - 1.0
411,248 + -0.5
411,506 - 11239 mRNA_2871 0.25 0.0
411,531 + 11239 mRNA_2871 0.28 0.5
411,660 - 11239 mRNA_2871 0.44 -0.0
411,687 + 11239 mRNA_2871 0.47 -0.2
411,692 - 11239 mRNA_2871 0.48 -0.1
411,692 - 11239 mRNA_2871 0.48 3.5
411,695 + 11239 mRNA_2871 0.48 -0.8
411,841 - 11239 mRNA_2871 0.66 -0.6
411,938 - 11239 mRNA_2871 0.79 0.5
411,944 - 11239 mRNA_2871 0.79 -0.4
412,077 + -0.3
412,102 - -1.1
412,123 + -1.8
412,239 - 1.4
412,278 - -0.8
412,281 + 2.9
412,285 + 2.5
412,287 - 0.1
412,288 - 0.6
412,288 - 0.4
412,293 + 0.7
412,294 + -0.0
412,301 - 0.1
412,303 - 0.1
412,309 + 0.6
412,317 - 0.2
412,318 - 0.8
412,368 - -0.4
412,615 + -0.3
412,769 - 11240 mRNA_2872 0.18 1.1
412,914 - 11240 mRNA_2872 0.28 1.2
413,045 + 11240 mRNA_2872 0.36 0.0
413,090 + 11240 mRNA_2872 0.39 1.3