Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2850

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2849: 11217 - K01611 speD, AMD1 S-adenosylmethionine decarboxylase, at 358278 to 359885 11217 mRNA_2850: 11218 - SUPERFAMILY--SSF52047, at 360186 to 362999 11218 mRNA_2851: 11219 - SUPERFAMILY--SSF52047, at 363401 to 364630 11219

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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359,740 + 0.1
360,076 - 1.1
360,085 - 0.5
360,112 - -0.9
360,248 + 0.1
360,269 - 0.5
360,521 - 11218 mRNA_2850 0.12 1.5
360,802 - 11218 mRNA_2850 0.22 0.4
360,873 - 11218 mRNA_2850 0.24 -0.5
361,030 - 11218 mRNA_2850 0.30 -0.5
361,036 + 11218 mRNA_2850 0.30 0.1
361,138 - 11218 mRNA_2850 0.34 -0.3
361,247 + 11218 mRNA_2850 0.38 2.4
361,277 - 11218 mRNA_2850 0.39 1.1
361,288 - 11218 mRNA_2850 0.39 0.2
361,310 - 11218 mRNA_2850 0.40 0.6
361,425 + 11218 mRNA_2850 0.44 -0.8
361,426 + 11218 mRNA_2850 0.44 -1.6
361,519 + 11218 mRNA_2850 0.47 1.2
361,569 - 11218 mRNA_2850 0.49 1.5
361,569 + 11218 mRNA_2850 0.49 -0.5
361,579 - 11218 mRNA_2850 0.50 0.8
361,733 + 11218 mRNA_2850 0.55 2.0
361,735 + 11218 mRNA_2850 0.55 1.5
361,738 + 11218 mRNA_2850 0.55 1.2
361,765 - 11218 mRNA_2850 0.56 -1.1
361,770 - 11218 mRNA_2850 0.56 -0.7
361,891 - 11218 mRNA_2850 0.61 2.0
362,187 + 11218 mRNA_2850 0.71 0.7
362,326 - 11218 mRNA_2850 0.76 0.6
362,382 + 11218 mRNA_2850 0.78 0.6
362,613 + 11218 mRNA_2850 0.86 0.6
362,774 + 1.1
363,004 - 1.0
363,232 + 1.7
363,336 + 0.2
363,337 + 0.4
363,348 - -0.4
363,364 - -1.0
363,564 - 11219 mRNA_2851 0.13 1.4
363,631 + 11219 mRNA_2851 0.19 0.1
363,634 + 11219 mRNA_2851 0.19 -0.9
363,676 + 11219 mRNA_2851 0.22 1.2