Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2839

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2838: 11206 - K02934 RP-L6e, RPL6 large subunit ribosomal protein L6e, at 331899 to 332766 11206 mRNA_2839: 11207 - K01427 URE urease, at 333745 to 337824 11207 mRNA_2840: 11208 - KOG4178 Soluble epoxide hydrolase, at 338126 to 339492 11208

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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333,212 + -0.4
333,323 + 1.5
333,347 + -0.8
333,358 - 2.2
333,362 + 1.6
333,495 - 0.0
333,642 + 0.3
333,671 + 0.1
333,782 + 0.9
333,957 + 1.4
334,218 - 11207 mRNA_2839 0.12 0.6
334,220 - 11207 mRNA_2839 0.12 0.7
334,431 + 11207 mRNA_2839 0.17 -1.8
334,542 + 11207 mRNA_2839 0.20 0.3
334,542 + 11207 mRNA_2839 0.20 -0.2
334,542 - 11207 mRNA_2839 0.20 0.9
334,685 - 11207 mRNA_2839 0.23 -1.9
334,827 + 11207 mRNA_2839 0.27 0.2
334,875 - 11207 mRNA_2839 0.28 0.4
334,982 - 11207 mRNA_2839 0.30 -0.1
335,263 - 11207 mRNA_2839 0.37 -0.9
335,402 - 11207 mRNA_2839 0.41 0.3
335,524 - 11207 mRNA_2839 0.44 0.5
335,548 - 11207 mRNA_2839 0.44 1.1
335,681 - 11207 mRNA_2839 0.47 1.1
336,001 - 11207 mRNA_2839 0.55 0.0
336,170 + 11207 mRNA_2839 0.59 1.1
336,301 + 11207 mRNA_2839 0.63 0.4
336,677 + 11207 mRNA_2839 0.72 2.0
336,824 + 11207 mRNA_2839 0.75 1.7
337,100 - 11207 mRNA_2839 0.82 1.6
337,360 + 11207 mRNA_2839 0.89 0.0
337,391 - 11207 mRNA_2839 0.89 0.9
337,449 + 0.8
337,557 - 0.7
337,571 - 1.3
337,571 - 1.4
337,577 + 1.8
337,596 + -0.3
337,779 - -1.1
337,779 - 1.8
337,860 + -0.2
337,883 + 0.8
337,897 - -0.4
338,013 - 1.9
338,188 + -1.1
338,204 + 0.1
338,214 + 1.3