Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2825

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2825: 11193 - HMMPfam-F-box-like-PF12937, at 306880 to 308238 11193 mRNA_2826: 11194 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 308472 to 309591 11194

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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306,149 + 1.3
306,422 - 0.1
306,435 + -0.6
306,453 - 1.1
306,459 - -1.4
306,464 + -0.2
306,472 + -2.1
306,602 - -1.0
306,616 - 1.0
306,617 - 0.2
306,620 + 1.1
306,633 - 1.0
306,678 + -0.1
306,683 + 1.1
306,686 - 0.0
306,726 - -0.3
306,750 + -0.6
306,912 + 0.5
306,981 - 0.4
307,039 - 11193 mRNA_2825 0.12 2.2
307,057 - 11193 mRNA_2825 0.13 -0.1
307,061 - 11193 mRNA_2825 0.13 0.0
307,126 - 11193 mRNA_2825 0.18 0.9
307,469 + 11193 mRNA_2825 0.43 -1.3
307,908 - 11193 mRNA_2825 0.76 0.1
307,921 - 11193 mRNA_2825 0.77 -0.0
307,924 - 11193 mRNA_2825 0.77 -0.9
307,927 - 11193 mRNA_2825 0.77 1.0
307,950 + 11193 mRNA_2825 0.79 1.8
308,070 - 11193 mRNA_2825 0.88 -0.2
308,071 + 11193 mRNA_2825 0.88 -0.4
308,083 + 11193 mRNA_2825 0.89 1.0
308,088 - 11193 mRNA_2825 0.89 0.6
308,091 - 11193 mRNA_2825 0.89 0.2
308,091 + 11193 mRNA_2825 0.89 0.4
308,198 - -1.4
308,198 - 0.5
308,203 - -0.1
308,209 + 1.4
308,209 + -0.8
308,212 - -0.6
308,213 + 0.5
308,216 + -0.3
308,232 + 1.0
308,245 - 0.1
308,261 - 0.6
308,262 + 0.9
308,359 + 0.9
308,372 + -0.1
308,388 + -0.0
308,395 + 1.3
308,401 + 0.6
308,417 - 2.0
308,418 - -0.5
308,418 + -0.7
308,424 - 1.8
308,431 - 0.2
308,535 + 2.3
308,557 - 0.9
308,569 + 1.2
308,579 + 0.4
308,582 - -0.1
308,583 - 0.9
308,586 - 11194 mRNA_2826 0.10 -0.2
308,589 - 11194 mRNA_2826 0.10 -0.5
308,708 + 11194 mRNA_2826 0.21 0.7
308,725 - 11194 mRNA_2826 0.23 1.4
308,870 + 11194 mRNA_2826 0.36 -0.2
308,997 + 11194 mRNA_2826 0.47 0.3
309,058 + 11194 mRNA_2826 0.52 -0.3
309,177 - 11194 mRNA_2826 0.63 0.7