Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2809

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2808: 11176 - KOG4539 Uncharacterized conserved protein, at 269906 to 271117 11176 mRNA_2809: 11177 - K08596 SENP7 sentrin-specific protease 7, at 271552 to 278521 11177 mRNA_2810: 11178 - K00026 MDH2 malate dehydrogenase, at 278707 to 280370 11178

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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270,594 + 11176 mRNA_2808 0.57 -0.7
270,639 - 11176 mRNA_2808 0.60 -1.5
271,064 + -0.3
271,078 + 1.1
271,204 - 2.3
271,223 + 0.4
271,356 + 0.4
271,363 - 1.2
271,512 + -0.2
271,552 - 0.6
271,786 - -0.5
272,341 + 11177 mRNA_2809 0.11 1.4
272,537 + 11177 mRNA_2809 0.14 0.7
272,545 - 11177 mRNA_2809 0.14 1.4
272,657 + 11177 mRNA_2809 0.16 2.4
272,671 - 11177 mRNA_2809 0.16 0.8
272,703 + 11177 mRNA_2809 0.17 0.0
272,955 - 11177 mRNA_2809 0.20 1.0
277,360 + 11177 mRNA_2809 0.83 0.5
278,171 - 1.6
278,394 + 1.0
278,467 + -1.3
278,552 + 0.2
278,665 + 0.9
278,689 + 1.3
278,703 + -1.0