Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2803

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2802: 11170 - K11309 RTT109, KAT11 regulator of Ty1 transposition protein 109, at 251577 to 253280 11170 mRNA_2803: 11171 - K01301 NAALAD N-acetylated-alpha-linked acidic dipeptidase, at 253457 to 256700 11171 mRNA_2804: 11172 - K10808 RRM2 ribonucleoside-diphosphate reductase subunit M2, at 257436 to 258912 11172

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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252,537 - 11170 mRNA_2802 0.56 -0.7
253,355 + -1.4
253,415 + 0.3
253,416 - -0.3
253,506 + -0.7
253,527 - 0.5
253,670 - -2.3
253,680 - 1.6
253,687 + -1.3
253,690 + -0.2
253,698 + -0.2
253,701 + -0.5
254,007 + 11171 mRNA_2803 0.17 0.7
254,133 - 11171 mRNA_2803 0.21 -0.1
254,165 + 11171 mRNA_2803 0.22 0.4
254,277 - 11171 mRNA_2803 0.25 -0.4
254,635 + 11171 mRNA_2803 0.36 0.1
254,711 - 11171 mRNA_2803 0.39 -0.5
254,723 - 11171 mRNA_2803 0.39 -1.2
254,727 + 11171 mRNA_2803 0.39 -1.8
254,969 + 11171 mRNA_2803 0.47 -0.8
255,132 - 11171 mRNA_2803 0.52 -0.3
255,943 - 11171 mRNA_2803 0.77 1.8
256,009 - 11171 mRNA_2803 0.79 -0.7
256,027 + 11171 mRNA_2803 0.79 1.7
256,046 + 11171 mRNA_2803 0.80 1.3
256,199 + 11171 mRNA_2803 0.85 2.1
256,596 - -0.1
256,602 - 0.1
256,603 - -0.6
256,615 - -0.1
256,784 + 0.6
256,797 + 0.5
256,890 - -0.2
256,909 + -0.1
256,923 + 0.0
256,927 + -0.1
256,935 + 1.7
256,940 + 2.2
257,059 + -0.8
257,070 - 1.1
257,073 + 0.0
257,079 + 1.1
257,090 - -0.6
257,202 - 1.3
257,211 + 2.0
257,214 - 0.1
257,219 + -0.3
257,237 + -0.2
257,240 - -0.1
257,368 + 0.9