Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2792

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2791: 11159 - K05544 DUS3 tRNA-dihydrouridine synthase 3, at 222568 to 225746 11159 mRNA_2792: 11160 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 226043 to 228012 11160 mRNA_2793: 11161 - KOG3834 Golgi reassembly stacking protein GRASP65, contains PDZ domain, at 228041 to 229604 11161

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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225,092 + 11159 mRNA_2791 0.79 -0.2
225,245 + 11159 mRNA_2791 0.84 0.4
225,328 + 11159 mRNA_2791 0.87 -0.7
225,407 - 11159 mRNA_2791 0.89 -1.3
225,715 + 1.0
225,717 - 0.7
226,194 + -1.4
226,424 - 11160 mRNA_2792 0.19 -0.1
226,426 - 11160 mRNA_2792 0.19 -0.0
226,629 + 11160 mRNA_2792 0.30 0.2
226,710 - 11160 mRNA_2792 0.34 0.9
226,734 - 11160 mRNA_2792 0.35 -0.4
226,755 + 11160 mRNA_2792 0.36 -2.0
226,755 - 11160 mRNA_2792 0.36 -0.2
226,782 - 11160 mRNA_2792 0.38 1.4
226,850 + 11160 mRNA_2792 0.41 0.5
226,853 - 11160 mRNA_2792 0.41 -0.3
227,080 - 11160 mRNA_2792 0.53 0.1
227,277 + 11160 mRNA_2792 0.63 -0.1
227,436 - 11160 mRNA_2792 0.71 0.1
227,732 + 11160 mRNA_2792 0.86 0.2
227,755 + 11160 mRNA_2792 0.87 -0.4
227,811 - 11160 mRNA_2792 0.90 1.4
227,816 + -0.6
227,817 - -0.6
227,824 - 3.2
227,826 + -1.1
227,828 + -0.3
227,830 + 1.1
227,837 + 0.3
228,082 - -0.3
228,104 - 0.9
228,123 + 1.1
228,123 + 0.4
228,299 + 11161 mRNA_2793 0.16 -0.3
228,303 + 11161 mRNA_2793 0.17 -0.6
228,390 - 11161 mRNA_2793 0.22 0.3
228,549 + 11161 mRNA_2793 0.32 0.2
228,563 + 11161 mRNA_2793 0.33 0.4
228,707 + 11161 mRNA_2793 0.43 0.9
228,740 + 11161 mRNA_2793 0.45 0.7
228,830 - 11161 mRNA_2793 0.50 -0.2