Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2756

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2755: 11123 - K20247 EGT2 hercynylcysteine sulfoxide lyase, at 143517 to 145999 11123 mRNA_2756: 11124 - KOG2450 Aldehyde dehydrogenase, at 146345 to 148269 11124

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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145,499 - 11123 mRNA_2755 0.80 0.7
145,517 + 11123 mRNA_2755 0.81 0.7
145,541 + 11123 mRNA_2755 0.82 1.5
145,552 + 11123 mRNA_2755 0.82 -1.0
145,571 - 11123 mRNA_2755 0.83 1.8
145,598 - 11123 mRNA_2755 0.84 -2.0
145,643 + 11123 mRNA_2755 0.86 -1.6
145,929 + 0.5
145,951 + 2.3
146,098 + 2.1
146,100 - 0.6
146,222 - 1.9
146,266 - -0.0
146,266 + 0.6
146,269 + -0.0
146,280 - -0.3
146,284 - -0.1
146,332 + -0.7
146,406 + -0.0
146,421 - -0.8
146,445 - 0.3
146,588 + 11124 mRNA_2756 0.13 -1.1
146,830 + 11124 mRNA_2756 0.25 -1.2
146,899 + 11124 mRNA_2756 0.29 -1.8
147,207 + 11124 mRNA_2756 0.45 -0.5
147,423 - 11124 mRNA_2756 0.56 0.5
147,466 - 11124 mRNA_2756 0.58 1.1
147,584 - 11124 mRNA_2756 0.64 1.6
147,592 + 11124 mRNA_2756 0.65 0.8
147,593 + 11124 mRNA_2756 0.65 -0.8
147,756 + 11124 mRNA_2756 0.73 0.1
147,882 + 11124 mRNA_2756 0.80 0.6
147,882 - 11124 mRNA_2756 0.80 0.8
147,888 + 11124 mRNA_2756 0.80 -1.0
148,064 - 11124 mRNA_2756 0.89 0.9
148,071 + 11124 mRNA_2756 0.90 -0.0
148,344 - -0.2
148,352 - 0.6
148,785 + 0.8
148,816 + 0.5
148,868 - -0.7