Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2705

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2704: 11072 - SUPERFAMILY--SSF54695, at 44136 to 45724 11072 mRNA_2705: 11073 - Hypothetical Protein, at 46347 to 46971 11073 mRNA_2706: 11074 - HMMPfam-PLAC8 family-PF04749,TIGRFAM-A_thal_Cys_rich uncharacterized Cys-rich domain-TIGR01571, at 47300 to 48078 11074

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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45,412 + 11072 mRNA_2704 0.80 0.3
45,441 - 11072 mRNA_2704 0.82 -0.6
45,598 + 0.2
45,917 + 3.0
46,019 - 0.1
46,022 - 0.3
46,160 - 2.4
46,174 - -0.4
46,191 + 0.1
46,198 + 1.6
46,201 + 1.8
46,292 + -0.2
46,324 + 0.1
46,340 + -0.1
46,342 - -1.3
46,346 - 2.0
46,364 + 0.3
46,481 - 11073 mRNA_2705 0.21 -0.8
46,643 - 11073 mRNA_2705 0.47 0.5
46,779 + 11073 mRNA_2705 0.69 0.1
46,795 + 11073 mRNA_2705 0.72 -0.2
46,795 + 11073 mRNA_2705 0.72 -0.0
46,796 - 11073 mRNA_2705 0.72 1.3
46,802 + 11073 mRNA_2705 0.73 1.0
46,881 - 11073 mRNA_2705 0.85 -1.1
46,882 - 11073 mRNA_2705 0.86 0.2
46,893 + 11073 mRNA_2705 0.87 -0.3
46,895 - 11073 mRNA_2705 0.88 -0.9
46,909 + -0.5
46,911 + 0.8
46,948 + 1.9
46,951 + 0.1
46,959 + 0.9
46,965 + -0.3
46,997 + 0.7
46,998 - -0.6
47,002 - -0.3
47,014 + 0.7
47,028 + 0.3
47,051 - -0.0
47,055 - 0.2
47,064 - -0.2
47,065 + -1.4
47,067 + -0.5
47,078 + 0.4
47,093 - 1.0
47,117 - 0.6
47,121 + -1.1
47,174 + 2.2
47,183 - 1.2
47,249 + 1.7
47,260 - 0.2
47,365 - -0.7
47,405 + 11074 mRNA_2706 0.13 2.3
47,582 + 11074 mRNA_2706 0.36 1.6
47,717 + 11074 mRNA_2706 0.54 -0.2
47,950 - 11074 mRNA_2706 0.83 0.6
47,966 + 11074 mRNA_2706 0.85 -0.8