Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2683

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2682: 11050 - K00589 MET1 uroporphyrin-III C-methyltransferase, at 767694 to 769770 11050 mRNA_2683: 11051 - K07300 chaA, CAX Ca2+-H+ antiporter, at 769946 to 774939 11051 mRNA_2684: 11052 - K02144 ATPeV1H V-type H+-transporting ATPase subunit H, at 775644 to 777796 11052

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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769,104 - 11050 mRNA_2682 0.68 -1.0
769,708 - -1.8
769,779 + 1.2
769,825 + 1.1
769,911 - -0.2
770,065 + 1.4
770,157 + -1.0
770,200 - 2.2
770,328 + -0.0
770,451 - 11051 mRNA_2683 0.10 0.7
770,468 - 11051 mRNA_2683 0.10 -0.9
770,548 - 11051 mRNA_2683 0.12 0.5
770,562 + 11051 mRNA_2683 0.12 0.4
770,594 + 11051 mRNA_2683 0.13 -0.1
770,754 - 11051 mRNA_2683 0.16 1.1
770,784 + 11051 mRNA_2683 0.17 -0.3
770,797 - 11051 mRNA_2683 0.17 1.6
771,052 + 11051 mRNA_2683 0.22 0.6
771,052 + 11051 mRNA_2683 0.22 1.2
771,081 - 11051 mRNA_2683 0.23 -0.3
771,100 + 11051 mRNA_2683 0.23 1.8
771,194 + 11051 mRNA_2683 0.25 0.4
771,239 + 11051 mRNA_2683 0.26 -0.0
771,380 + 11051 mRNA_2683 0.29 0.7
771,607 - 11051 mRNA_2683 0.33 1.5
771,607 - 11051 mRNA_2683 0.33 0.5
771,643 - 11051 mRNA_2683 0.34 -0.4
771,647 - 11051 mRNA_2683 0.34 0.6
771,662 - 11051 mRNA_2683 0.34 0.3
771,665 - 11051 mRNA_2683 0.34 0.3
771,790 + 11051 mRNA_2683 0.37 1.7
771,814 - 11051 mRNA_2683 0.37 0.4
771,967 + 11051 mRNA_2683 0.40 -0.1
772,066 + 11051 mRNA_2683 0.42 3.1
772,093 - 11051 mRNA_2683 0.43 1.2
772,099 + 11051 mRNA_2683 0.43 2.4
772,102 - 11051 mRNA_2683 0.43 0.9
772,105 + 11051 mRNA_2683 0.43 1.4
772,283 + 11051 mRNA_2683 0.47 1.6
772,396 + 11051 mRNA_2683 0.49 0.2
772,480 - 11051 mRNA_2683 0.51 0.2
772,524 + 11051 mRNA_2683 0.52 0.2
772,526 - 11051 mRNA_2683 0.52 -0.7
772,573 + 11051 mRNA_2683 0.53 0.0
772,651 - 11051 mRNA_2683 0.54 1.5
772,938 - 11051 mRNA_2683 0.60 1.8
772,997 + 11051 mRNA_2683 0.61 0.6
773,025 + 11051 mRNA_2683 0.62 1.9
773,101 + 11051 mRNA_2683 0.63 -1.6
773,131 - 11051 mRNA_2683 0.64 0.1
773,137 - 11051 mRNA_2683 0.64 0.7
773,219 + 11051 mRNA_2683 0.66 -0.2
773,323 - 11051 mRNA_2683 0.68 0.5
773,465 - 11051 mRNA_2683 0.70 1.3
773,608 - 11051 mRNA_2683 0.73 -1.0
773,723 - 11051 mRNA_2683 0.76 1.5
773,891 - 11051 mRNA_2683 0.79 2.1
773,990 - 11051 mRNA_2683 0.81 0.1
774,043 - 11051 mRNA_2683 0.82 0.5
774,047 - 11051 mRNA_2683 0.82 0.6
774,223 + 11051 mRNA_2683 0.86 0.6
774,457 + 0.8
774,634 - 0.9
774,751 + 1.7
775,019 - 2.1
775,062 + 0.7
775,179 - 1.8
775,216 + -0.0
775,217 + 0.4
775,315 - 0.5
775,320 + 0.2
775,350 - 1.0
775,351 + 0.9
775,419 + 1.2
775,454 - 1.7
775,616 - -0.2
775,616 + -0.3