Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2678

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2677: 11045 - ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157, at 756988 to 757590 11045 mRNA_2678: 11046 - KOG3102 Uncharacterized conserved protein, at 758219 to 759317 11046 mRNA_2679: 11047 - K14262 DUG2 di- and tripeptidase, at 759389 to 763569 11047

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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757,318 - 11045 mRNA_2677 0.55 0.1
757,325 + 11045 mRNA_2677 0.56 -0.4
757,355 - 11045 mRNA_2677 0.61 -0.2
757,424 + 11045 mRNA_2677 0.72 1.2
757,462 - 11045 mRNA_2677 0.79 -0.2
757,640 - -0.1
757,737 + 1.0
757,747 - 0.3
757,803 - 0.1
757,880 + 0.5
757,886 - -0.5
757,913 - -0.5
758,065 - 2.4
758,221 - 0.0
758,228 + 1.1
758,229 + -0.1
758,318 - 0.4
758,407 + 11046 mRNA_2678 0.17 1.0
758,710 - 11046 mRNA_2678 0.45 1.7
758,793 + 11046 mRNA_2678 0.52 0.5
759,076 + 11046 mRNA_2678 0.78 1.7
759,078 - 11046 mRNA_2678 0.78 -0.2
759,176 + 11046 mRNA_2678 0.87 0.6
759,239 + 1.3
759,241 + 0.5
759,271 + 0.4
759,271 + 1.7
759,383 - -1.0
759,421 + 2.5
759,517 + 0.9
759,811 - 11047 mRNA_2679 0.10 1.7
759,835 + 11047 mRNA_2679 0.11 -0.0
759,855 + 11047 mRNA_2679 0.11 0.1
759,940 - 11047 mRNA_2679 0.13 1.3
759,941 + 11047 mRNA_2679 0.13 1.0
760,064 - 11047 mRNA_2679 0.16 0.2
760,100 - 11047 mRNA_2679 0.17 -0.2
760,117 + 11047 mRNA_2679 0.17 0.8
760,244 + 11047 mRNA_2679 0.20 1.9