Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2643

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2642: 11010 - K17428 MRPL47, NCM1 large subunit ribosomal protein L47, at 659870 to 660906 11010 mRNA_2643: 11011 - K01254 LTA4H leukotriene-A4 hydrolase, at 661173 to 664262 11011 mRNA_2644: 11012 - SUPERFAMILY--SSF52058, at 664432 to 665418 11012

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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660,920 - 0.7
660,931 + 0.3
661,076 + 0.6
661,086 + -0.0
661,088 - -1.0
661,158 - 0.6
661,386 - -0.0
661,696 - 11011 mRNA_2643 0.17 -1.6
661,807 - 11011 mRNA_2643 0.21 1.3
661,821 - 11011 mRNA_2643 0.21 0.9
661,855 + 11011 mRNA_2643 0.22 -0.0
662,132 - 11011 mRNA_2643 0.31 -2.0
662,132 - 11011 mRNA_2643 0.31 0.9
662,422 - 11011 mRNA_2643 0.40 0.4
662,460 + 11011 mRNA_2643 0.42 0.3
662,688 - 11011 mRNA_2643 0.49 1.1
663,132 - 11011 mRNA_2643 0.63 -0.2
663,154 + 11011 mRNA_2643 0.64 1.3
663,175 + 11011 mRNA_2643 0.65 0.4
663,302 + 11011 mRNA_2643 0.69 2.6
663,447 + 11011 mRNA_2643 0.74 -1.3
663,624 - 11011 mRNA_2643 0.79 -1.5
663,770 + 11011 mRNA_2643 0.84 -0.0
663,897 + 11011 mRNA_2643 0.88 0.2
664,051 - 0.3
664,272 + 2.5
664,351 + 0.1
664,428 - -0.3
664,460 + 0.8
664,478 + 1.0
664,481 - 0.5
664,487 + 1.0
664,604 - 11012 mRNA_2644 0.17 0.7